Browse Element(s) Details


OsAffx.19544.1.S1_at

Description tigr:9640.m00715
TID=OsAffx.19544.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0784011/11dehydration-responsive protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
LOC_Os12g07840OsAffx.19544.1.S1_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07840OsAffx.19544.1.S1_x_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07850NANA12+3972955..3975392hypothetical protein
LOC_Os12g07860OsAffx.29764.1.S1_x_at2/1112+3976137..3976930MtN3/saliva family protein
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07880Os.19541.1.S1_at11/1112+3985781..3993483dynamin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19544.1.S1_at--94--4171Chr12:3968942..3968966 (25 bp)
CGCCAGACGACTTCGCGGCGGACGA
LOC_Os12g07840
OsAffx.19544.1.S1_at--733--6171Chr12:3968965..3968989 (25 bp)
GAGGAGCACTGGAACCACGTCGTCA
LOC_Os12g07840
OsAffx.19544.1.S1_at--857--8051Chr12:3968967..3968991 (25 bp)
GGAGCACTGGAACCACGTCGTCAAC
LOC_Os12g07840
OsAffx.19544.1.S1_at--92--4031Chr12:3969039..3969063 (25 bp)
CGTCATGGACATGCGAGCCGTGTAT
LOC_Os12g07840
OsAffx.19544.1.S1_at--818--3491Chr12:3969042..3969066 (25 bp)
CATGGACATGCGAGCCGTGTATGGC
LOC_Os12g07840
OsAffx.19544.1.S1_at--565--8971Chr12:3969543..3969567 (25 bp)
TGAACGTGGTGCCAGTGGACTCGGC
LOC_Os12g07840
OsAffx.19544.1.S1_at--825--5391Chr12:3969926..3969950 (25 bp)
GAAGCTGATCGTGCGGGACGGCCGC
LOC_Os12g07840
OsAffx.19544.1.S1_at--429--6011Chr12:3969969..3969993 (25 bp)
GAGAGCATCCTGAGGTCGTTGCACT
LOC_Os12g07840
OsAffx.19544.1.S1_at--967--3531Chr12:3969974..3969998 (25 bp)
CATCCTGAGGTCGTTGCACTGGGAG
LOC_Os12g07840
OsAffx.19544.1.S1_at--73--1051Chr12:3969997..3970021 (25 bp)
AGGTGAGGATGACGGTGTCCAAGCA
LOC_Os12g07840
OsAffx.19544.1.S1_at--571--9211Chr12:3970014..3970038 (25 bp)
TCCAAGCAGGGAGAGGTGATGCTCT
LOC_Os12g07840
Target Sequence 
CGCCAGACGACTTCGCGGCGGACGAGGAGCACTGGAACCACGTCGTCAACAGCTCGTACCTCGCCGGCGTCGGCATCGAC
TGGAGCAACGTCAGGAACGTCATGGACATGCGAGCCGTGTATGGCGGGTTCGCGGCGGCATTGAAGGACATGAATGTGTG
GGTGATGAACGTGGTGCCAGTGGACTCGGCGGACACGCTGCCGATCATCTATGAGCGAGGGCTGTTTGGCATGTACCACG
ACTGGTGCGAGTCCTTCAGCACCTACCCTCGATCATACGACCTCCTCCACGCCGACCATCTCTTCTCCAAGCTCAAGAAA
AGGTGCAAGCTGTTGCCGGTGATGGTCGAGGTGGACCGGATCCTGCGGCCGGAGGGGAAGCTGATCGTGCGGGACGGCCG
CGACACGGCGGCGGAGGTGGAGAGCATCCTGAGGTCGTTGCACTGGGAGGTGAGGATGACGGTGTCCAAGCAGGGAGAGG
TGATGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis