Browse Element(s) Details


OsAffx.19051.1.S1_at

Description tigr:9639.m02560
TID=OsAffx.19051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2838011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28360Os.54773.1.S1_at11/1111+15815169..15819625Ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
LOC_Os11g28370OsAffx.19050.1.S1_at11/1111+15834004..15836835hypothetical protein
LOC_Os11g28380OsAffx.19051.1.S1_at11/1111+15838441..15838878hypothetical protein
LOC_Os11g28390OsAffx.21330.1.S1_at1/1111+15840149..15841075hypothetical protein
LOC_Os11g28400NANA11+15842208..15847228retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.7544.1.S1_at9/1111+15847738..15858186retrotransposon protein, putative, unclassified
LOC_Os11g28410Os.5217.1.S1_at1/1111+15847738..15858186retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19051.1.S1_at--998--10311Chr11:15838798..15838822 (25 bp)
TTTCTTTTTTCACTTCATCTCTTTC
LOC_Os11g28380
OsAffx.19051.1.S1_at--25--10391Chr11:15838792..15838816 (25 bp)
TTTTCACTTCATCTCTTTCATTCTT
LOC_Os11g28380
OsAffx.19051.1.S1_at--176--3771Chr11:15838780..15838804 (25 bp)
CTCTTTCATTCTTCCGGCAGATGGG
LOC_Os11g28380
OsAffx.19051.1.S1_at--889--3951Chr11:15838712..15838736 (25 bp)
CGGAGAGGCCGCGTTGGAGCATAGG
LOC_Os11g28380
OsAffx.19051.1.S1_at--722--4611Chr11:15838661..15838685 (25 bp)
GCGAGCCAAGGCTTCGAGCAGTAGC
LOC_Os11g28380
OsAffx.19051.1.S1_at--812--4911Chr11:15838651..15838675 (25 bp)
GCTTCGAGCAGTAGCCATCTCCAAG
LOC_Os11g28380
OsAffx.19051.1.S1_at--189--5931Chr11:15838646..15838670 (25 bp)
GAGCAGTAGCCATCTCCAAGCCCTG
LOC_Os11g28380
OsAffx.19051.1.S1_at--777--4731Chr11:15838614..15838638 (25 bp)
GCTGTCAGGCGAACCGCCGCCAAGG
LOC_Os11g28380
OsAffx.19051.1.S1_at--914--3191Chr11:15838594..15838618 (25 bp)
CAAGGCCAAGCAGCGCGAAGTCGTC
LOC_Os11g28380
OsAffx.19051.1.S1_at--639--4391Chr11:15838590..15838614 (25 bp)
GCCAAGCAGCGCGAAGTCGTCGACG
LOC_Os11g28380
OsAffx.19051.1.S1_at--793--5671Chr11:15838512..15838536 (25 bp)
GACATTGCCGCTTCACCTGCTCTAG
LOC_Os11g28380
Target Sequence 
TTTCTTTTTTCACTTCATCTCTTTCATTCTTCCGGCAGATGGGGAGCAGCAGCGGGCGGCTAGAGCAGGGAAAGCGGCAG
CGGCGGCGGAGAGGCCGCGTTGGAGCATAGGGGCAAGGGGCGTGGGGGGTGCGGCGGGCGAGCCAAGGCTTCGAGCAGTA
GCCATCTCCAAGCCCTGCAACGCCGCTGTCAGGCGAACCGCCGCCAAGGCCAAGCAGCGCGAAGTCGTCGACGCCCGCCT
CTCCCCATCCGCCGTCACCGCCACTCCGCCACCGTACTCGCCTGCCGACATTGCCGCTTCACCTGCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis