Browse Element(s) Details


Os.8952.1.S1_at

Description gb:AK073686.1
DB_XREF= gi:32983709
TID=Os.8952.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.8952 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033057B17, full insert sequence.
FL= gb:AK073686.1 gb:AK104618.1 gb:AK061749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2830011/11Uncharacterized protein family UPF0016 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28270Os.12914.1.S2_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28270Os.12914.1.S1_at11/1111+15747751..15757175Zinc finger CCCH type domain containing protein ZFN, putative, expressed
LOC_Os11g28280OsAffx.7232.1.S1_at10/1111+15767413..15769103hypothetical protein
LOC_Os11g28280OsAffx.17666.1.S1_at1/1111+15767413..15769103hypothetical protein
LOC_Os11g28290NANA11+15771296..15772461transposon protein, putative, Pong sub-class
LOC_Os11g28300Os.8952.1.S1_at11/1111+15773640..15777993Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g28310OsAffx.31179.1.S1_at11/1111+15780072..15780839P21-Rho-binding domain containing protein
LOC_Os11g28320OsAffx.7233.1.S1_at11/1111+15789429..15790234hypothetical protein
LOC_Os11g28330OsAffx.31180.1.S1_at11/1111+15793308..15795195hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8952.1.S1_at--461--7031Chr11:15776969..15776989 (21 bp)
GTACACCGATCTTTTTGGAGGCTTT
LOC_Os11g28300
Os.8952.1.S1_at--451--431Chr11:15777230..15777254 (25 bp)
ATCTTAACCTTCTTAGCTGAATGGG
LOC_Os11g28300
Os.8952.1.S1_at--249--291Chr11:15777269..15777491 (25 bp)
ATAGCAACTATTGCGCTTGCAACCC
LOC_Os11g28300
Os.8952.1.S1_at--567--5031Chr11:15777512..15777536 (25 bp)
GCAGTTGGAGCATCATTGGGCCACA
LOC_Os11g28300
Os.8952.1.S1_at--916--31Chr11:15777526..15777550 (25 bp)
ATTGGGCCACACTGTCTGCACATCA
LOC_Os11g28300
Os.8952.1.S1_at--943--5131Chr11:15777605..15777629 (25 bp)
GCAACAATCGGAGGTGTTCTCTTCT
LOC_Os11g28300
Os.8952.1.S1_at--271--6711Chr11:15777634..15777658 (25 bp)
GTTCTCCGTGTCATCGTACTTCTAT
LOC_Os11g28300
Os.8952.1.S1_at--1137--2131Chr11:15777683..15777707 (25 bp)
ACAGCTCCTTACTCTTTCTTGATAC
LOC_Os11g28300
Os.8952.1.S1_at--298--3751Chr11:15777774..15777798 (25 bp)
CTCTACGCTACGATTCGCAATTCAT
LOC_Os11g28300
Os.8952.1.S1_at--154--5611Chr11:15777816..15777840 (25 bp)
GAAATTGTTCCTGACCATGCTACTT
LOC_Os11g28300
Os.8952.1.S1_at--426--771Chr11:15777881..15777905 (25 bp)
ATGTCTGATTTTTTGCTTGGTTGTA
LOC_Os11g28300
Target Sequence 
GTACACCGATCTTTTTGGAGGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG
CTTGCAACCCACAAGNAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCCACACTGTCTGCACATCACTTGCAGTCA
TAGGTGGGAGCATGTTGGCATCCAAGATTTCACAACGGACAGTTGCAACAATCGGAGGTGTTCTCTTCTTGGGGTTCTCC
GTGTCATCGTACTTCTATCCCCCACTATGATTAACAGCATTAACAGCTCCTTACTCTTTCTTGATACCCTTTGGTCACCC
TGCTCCCTGTGTTGAGCAAATGAGTAGAGGAATTAAATTGATTCTTTGGGCACCTCTACGCTACGATTCGCAATTCATGT
ATAGCCCTTGCAAATGAAATTGTTCCTGACCATGCTACTTCACTTCAGTCTATAGCAGAAGCCGTCTCGATGATGAAATC
ATGTCTGATTTTTTGCTTGGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis