Browse Element(s) Details


Os.51609.1.S1_at

Description gb:AK063171.1
DB_XREF= gi:32973189
TID=Os.51609.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-H05, full insert sequence.
FL= gb:AK063171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4343010/11expressed protein
LOC_Os04g476801/11Ser/Thr-rich protein T10 in DGCR region, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51609.1.S1_at--84--2194Chr02:20135583..20135607 (25 bp)
ACAAAAATCTCTAAAGTGGCATTTC
NONE
Os.51609.1.S1_at--1068--7496Chr08:19544560..19544584 (25 bp)
GTGGCATTTCATCCGGTAGGCAACG
NONE
Os.51609.1.S1_at--461--6937Chr09:9665544..9665567 (24 bp)
GTAGGCAACGTATTGAGTGGCATTT
NONE
Os.51609.1.S1_at--185--1094Chr03:32781311..32781333 (23 bp)
AGTGGCATTTTATCCGGTGCATTGT
NONE
Os.51609.1.S1_at--560--10133Chr10:2768414..2768437 (24 bp)
TATCCGGTGCATTGTATTGAGTGGC
NONE
Os.51609.1.S1_at--186--1091Chr01:25177341..25177365 (25 bp)
AGTGGCATTTTATCCCACCCATCTT
LOC_Os01g43430
Os.51609.1.S1_at--848--10371Chr01:25177334..25177358 (25 bp)
TTTTATCCCACCCATCTTATAGAGT
LOC_Os01g43430
Os.51609.1.S1_at--941--3352Chr03:32781991..32782011 (21 bp)
CACCCATCTTATAGAGTGGCATATT
NONE
Os.51609.1.S1_at--192--8291Chr01:25177309..25177333 (25 bp)
GGCATATTGTTCGTTTTCTCAACTA
LOC_Os01g43430
Os.51609.1.S1_at--901--8771Chr01:25177302..25177326 (25 bp)
TGTTCGTTTTCTCAACTAAGTTGTG
LOC_Os01g43430
Os.51609.1.S1_at--175--9711Chr01:25177291..25177315 (25 bp)
TCAACTAAGTTGTGGCGTTTTGTGT
NONE
Target Sequence 
ACAAAAATCTCTAAAGTGGCATTTCATCCGGTAGGCAACGTATTGAGTGGCATTTTATCCGGTGCATTGTATTGAGTGGC
ATTTTATCCCACCCATCTTATAGAGTGGCATATTGTTCGTTTTCTCAACTAAGTTGTGGCGTTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis