Browse Element(s) Details


Os.27820.1.S1_at

Description gb:CB642720
DB_XREF= gi:29637711
DB_XREF=OSJNEb03A20.r
CLONE=OSJNEb03A20
TID=Os.27820.1
CNT=19
FEA=mRNA
TIER=Stack
STK=6
UG=Os.27820 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calcium-dependent protein kinase (P0501G01.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4341011/11Calcium-dependent protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27820.1.S1_at--612--5671Chr01:25169976..25170000 (25 bp)
GACATCTTTCCTCATTATATTCCAA
LOC_Os01g43410
Os.27820.1.S1_at--469--2731Chr01:25169999..25170023 (25 bp)
AAGAACACCCCTTAAGAGGCTTGAT
LOC_Os01g43410
Os.27820.1.S1_at--974--8891Chr01:25170028..25170052 (25 bp)
TGAGATCCATACACCTGTTGCCAGG
LOC_Os01g43410
Os.27820.1.S1_at--1148--8271Chr01:25170052..25170076 (25 bp)
GGCTTGGACCCATTTGTACTCAAAT
LOC_Os01g43410
Os.27820.1.S1_at--982--6351Chr01:25170102..25170126 (25 bp)
GATGCCTGGACCATCATGGATTTCT
LOC_Os01g43410
Os.27820.1.S1_at--522--831Chr01:25170117..25170141 (25 bp)
ATGGATTTCTGAGTGCTGCTTTGTT
LOC_Os01g43410
Os.27820.1.S1_at--801--10791Chr01:25170137..25170161 (25 bp)
TTGTTATTCGTTGCCTCATCATTCA
LOC_Os01g43410
Os.27820.1.S1_at--896--6111Chr01:25170167..25170191 (25 bp)
GAGTGTAACCTCAACGGGATGATCA
LOC_Os01g43410
Os.27820.1.S1_at--1131--711Chr01:25170185..25170209 (25 bp)
ATGATCAGTTCAACTGCTCTTCCGA
LOC_Os01g43410
Os.27820.1.S1_at--971--4811Chr01:25170200..25170224 (25 bp)
GCTCTTCCGAGCGTGTTGCGACTTG
LOC_Os01g43410
Os.27820.1.S1_at--1--5711Chr01:25170226..25170250 (25 bp)
GACTATATGCCACTTGATCGTTTGT
LOC_Os01g43410
Target Sequence 
GACATCTTTCCTCATTATATTCCAAGAACACCCCTTAAGAGGCTTGATCATCTGAGATCCATACACCTGTTGCCAGGGCT
TGGACCCATTTGTACTCAAATGGAGTTGCGCGATATATCATTTGTAGATGCCTGGACCATCATGGATTTCTGAGTGCTGC
TTTGTTATTCGTTGCCTCATCATTCAATTTGGAGTGTAACCTCAACGGGATGATCAGTTCAACTGCTCTTCCGAGCGTGT
TGCGACTTGTGACTATATGCCACTTGATCGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis