Browse Element(s) Details


OsAffx.32230.1.A1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32230.1
CNT=1
FEA=DNA_31
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; atpE; ATPase epsilon subunit (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g270504/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os02g255802/11SNARE-interacting protein KEULE, putative, expressed
LOC_Os01g434101/11Calcium-dependent protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0006886biological_processintracellular protein transport
GO:0007165biological_processsignal transduction
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0008565molecular_functionprotein transporter activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32230.1.A1_x_at--973--1998Chr12:11285912..11285936 (25 bp)
ACTCGTATCCTAGCTCGTCTGAGAG
NONE
OsAffx.32230.1.A1_x_at--665--10639Chr12:11285942..11285966 (25 bp)
TTCGCTTCAACCAATTCTTTCGTAC
NONE
OsAffx.32230.1.A1_x_at--609--2018Chr12:11285977..11286001 (25 bp)
ACTCACGTTAGCTTCGGCTATTTCA
NONE
OsAffx.32230.1.A1_x_at--970--103310Chr12:11285997..11286021 (25 bp)
TTTCAAGTGCCTGTTGAGCTTCTTC
NONE
OsAffx.32230.1.A1_x_at--502--1558Chr12:11286013..11286037 (25 bp)
AGCTTCTTCCGGATCAATGTCACTA
NONE
OsAffx.32230.1.A1_x_at--298--4358Chr12:11286039..11286063 (25 bp)
CCAGTTCCGCATCATTTCCTAAAAT
NONE
OsAffx.32230.1.A1_x_at--380--1438Chr12:5610646..5610670 (25 bp)
AGAACCGCCGTTAACCATTGATCGT
NONE
OsAffx.32230.1.A1_x_at--344--6179Chr12:11286133..11286157 (25 bp)
GAGGCGTATTCTCAAGGGACCCATA
NONE
OsAffx.32230.1.A1_x_at--378--76310Chr12:11286148..11286172 (25 bp)
GGGACCCATATCTACAGCTGTGTTA
NONE
OsAffx.32230.1.A1_x_at--301--41510Chr12:11286195..11286219 (25 bp)
CGCCAATTTGGCCACTATTAGTAGA
NONE
OsAffx.32230.1.A1_x_at--1098--10319Chr12:5610770..5610794 (25 bp)
TTTCTTTCACTTCACAATCCCAAAT
NONE
Target Sequence 
ACTCGTATCCTAGCTCGTCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCACGTTAGCTTC
GGCTATTTCAAGTGCCTGTTGAGCTTCTTCCGGATCAATGTCACTACCCAGTTCCGCATCATTTCCTAAAATGATGATCT
CATTATTAACTATTCTGGCAAAACCGCTCCACAGAACCGCCGTTAACCATTGATCGTTGAGGAGGCGTATTCTCAAGGGA
CCCATATCTACAGCTGTGTTAATGGGGGCGTGGTTTGGTAATACGCCAATTTGGCCACTATTAGTAGATAAAATGATTTC
TTTCACTTCACAATCCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32230.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis