Browse Element(s) Details


OsAffx.5947.1.S1_at

Description tigr:9636.m02673
TID=OsAffx.5947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2706011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5947.1.S1_at--54--5071Chr08:16400980..16401004 (25 bp)
GCAGCATACCTTGCTCGATGCACAG
LOC_Os08g27060
OsAffx.5947.1.S1_at--339--6331Chr08:16400964..16400988 (25 bp)
GATGCACAGCTTGGAGTACGAATCA
LOC_Os08g27060
OsAffx.5947.1.S1_at--597--1071Chr08:16400931..16400955 (25 bp)
AGGGAGTCAGTGCTCCTTGGTCTCA
LOC_Os08g27060
OsAffx.5947.1.S1_at--105--8591Chr08:16400914..16400938 (25 bp)
TGGTCTCACTGCCATGGTGGAATAC
LOC_Os08g27060
OsAffx.5947.1.S1_at--1049--7711Chr08:16400899..16400923 (25 bp)
GGTGGAATACGCCAATCATTTTAGA
LOC_Os08g27060
OsAffx.5947.1.S1_at--66--1131Chr08:16400848..16400868 (21 bp)
AGTGCTGCTCTATCTGTACCGAAAA
LOC_Os08g27060
OsAffx.5947.1.S1_at--522--8751Chr08:16400712..16400854 (25 bp)
TGTACCGAAAATCATGCCCACCTTG
LOC_Os08g27060
OsAffx.5947.1.S1_at--362--5711Chr08:16400683..16400707 (25 bp)
GACTACATGAGACCTACTTGGACTT
LOC_Os08g27060
OsAffx.5947.1.S1_at--1090--8511Chr08:16400665..16400689 (25 bp)
TGGACTTTTACCAGGACTATACCGA
LOC_Os08g27060
OsAffx.5947.1.S1_at--712--3151Chr08:16400223..16400654 (25 bp)
CAATACCTTTATTTACTGGCTCCTT
LOC_Os08g27060
OsAffx.5947.1.S1_at--100--191Chr08:16400213..16400237 (25 bp)
ATTTACTGGCTCCTTTGCGCCGAAA
LOC_Os08g27060
Target Sequence 
GCAGCATACCTTGCTCGATGCACAGCTTGGAGTACGAATCAAAGGAGAAAGGGAGTCAGTGCTCCTTGGTCTCACTGCCA
TGGTGGAATACGCCAATCATTTTAGAACGGAGGAAGTATTACTAAAACAGATTAGCAGTGCTGCTCTATCTGTACCGAAA
ATCATGCCCACCTTGAAAAGACTACATGAGACCTACTTGGACTTTTACCAGGACTATACCGAAAACTTCCAACAATACCT
TTATTTACTGGCTCCTTTGCGCCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis