Browse Element(s) Details


Os.51117.1.S1_at

Description gb:AK060942.1
DB_XREF= gi:32970960
TID=Os.51117.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-D03, full insert sequence.
FL= gb:AK060942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2704011/11Lipid phosphate phosphatase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51117.1.S1_at--965--2271Chr08:16390636..16390660 (25 bp)
AAATCCTCGTTTTCTTCCTGTGAGA
LOC_Os08g27040
Os.51117.1.S1_at--814--5111Chr08:16390606..16390630 (25 bp)
GCACATATCTCTTAGGGCACTCTTA
LOC_Os08g27040
Os.51117.1.S1_at--20--7611Chr08:16390592..16390616 (25 bp)
GGGCACTCTTACCTGGGAATATTTC
LOC_Os08g27040
Os.51117.1.S1_at--794--6571Chr08:16390520..16390544 (25 bp)
GATTCTCATTCGTTTATGGGTGCCT
LOC_Os08g27040
Os.51117.1.S1_at--513--10791Chr08:16390409..16390433 (25 bp)
TTGTTGTTTACCTTTTCAGCGGCTG
LOC_Os08g27040
Os.51117.1.S1_at--1045--7691Chr08:16390373..16390397 (25 bp)
GGTGACGTATCCAGTCAACTCTAGA
LOC_Os08g27040
Os.51117.1.S1_at--833--2091Chr08:16390349..16390373 (25 bp)
ACATCTTTTGTCGACTCATCAGTAA
LOC_Os08g27040
Os.51117.1.S1_at--887--3431Chr08:16390323..16390347 (25 bp)
CAGATTACGCCCCTTTCTATAAATT
LOC_Os08g27040
Os.51117.1.S1_at--597--9111Chr08:16390298..16390322 (25 bp)
TGCTGCTGATTCTTCTGTCTTGGAT
LOC_Os08g27040
Os.51117.1.S1_at--903--10411Chr08:16390213..16390237 (25 bp)
TTATTCCCCTAGTCTTTACTGTTCA
LOC_Os08g27040
Os.51117.1.S1_at--152--1991Chr08:16390148..16390172 (25 bp)
ACTGCTGCTTATTACTGTTTCATAC
LOC_Os08g27040
Target Sequence 
AAATCCTCGTTTTCTTCCTGTGAGATTTATGCACATATCTCTTAGGGCACTCTTACCTGGGAATATTTCGTTGTTTTTGC
AGTGATTCTCGTTAGTGATTTCGTTGTTTTTGCAGTGATTCTCATTCGTTTATGGGTGCCTATTTTTAGGATTATTGGGT
GTTTTCTAGGTTGTTATTGCTAGAAATGCTAGGTTTTTTTTGGTTCAACTGGATAAGGTTGTTTAAGTTTGTTGTTTACC
TTTTCAGCGGCTGTGGTTTGGACTGGTGACGTATCCAGTCAACTCTAGACATCTTTTGTCGACTCATCAGTAAACAGATT
ACGCCCCTTTCTATAAATTTGCTGCTGATTCTTCTGTCTTGGATTTTTAACAGCTCATAAGCTCATATAACCTGCAACTG
ATTTATGGATCCGTTGAATTGTTTTTATTCCCCTAGTCTTTACTGTTCACTAAAGTAAAAAAATGAATGGCACATATTAA
TAATGATAAACTGCTGCTTATTACTGTTTCATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis