Browse Element(s) Details


OsAffx.5946.1.S1_at

Description tigr:9636.m02668
TID=OsAffx.5946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26990OsAffx.29407.3.S1_x_at8/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.3.S1_at7/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.1.S1_at2/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5946.1.S1_at--482--10011Chr08:16379964..16379988 (25 bp)
TAGAAGGTTGTTGTCGCAATGCGAT
LOC_Os08g27020
OsAffx.5946.1.S1_at--978--3191Chr08:16379980..16380004 (25 bp)
CAATGCGATGGCACGGGTTCATGCT
LOC_Os08g27020
OsAffx.5946.1.S1_at--358--7891Chr08:16379995..16380019 (25 bp)
GGTTCATGCTCGACACGTGTGGACG
LOC_Os08g27020
OsAffx.5946.1.S1_at--527--3791Chr08:16380041..16380065 (25 bp)
CTCCGAAGGCGGTGTTTGAGAGCTT
LOC_Os08g27020
OsAffx.5946.1.S1_at--1022--6011Chr08:16380069..16380093 (25 bp)
GAGAGTTCCCTCAAGCAAATCAAAT
LOC_Os08g27020
OsAffx.5946.1.S1_at--776--3131Chr08:16380103..16380127 (25 bp)
AATTAGTTCACCTCTTGTAAGTAGC
LOC_Os08g27020
OsAffx.5946.1.S1_at--952--9631Chr08:16380150..16380174 (25 bp)
TCAGTTTTTGTCCTCACTTCTTGGG
LOC_Os08g27020
OsAffx.5946.1.S1_at--491--6351Chr08:16380191..16380215 (25 bp)
GATGCCTTCAGGTGATCCATTCAGT
LOC_Os08g27020
OsAffx.5946.1.S1_at--942--10391Chr08:16380257..16380281 (25 bp)
TTTTGATGGCAAACTCTAGCTACCT
LOC_Os08g27020
OsAffx.5946.1.S1_at--450--10011Chr08:16380273..16380297 (25 bp)
TAGCTACCTCAATTGCAGCCAGTCA
LOC_Os08g27020
OsAffx.5946.1.S1_at--662--5071Chr08:16380287..16380311 (25 bp)
GCAGCCAGTCATGTACAGTTTCCAA
LOC_Os08g27020
Target Sequence 
TAGAAGGTTGTTGTCGCAATGCGATGGCACGGGTTCATGCTCGACACGTGTGGACGGGCTTGGAAGGTTCGAGAAGACTC
CGAAGGCGGTGTTTGAGAGCTTGAAGAGAGTTCCCTCAAGCAAATCAAATCCATCACATAATTAGTTCACCTCTTGTAAG
TAGCAAATGCTTTGAGTTAGTTTTCTTCAGTTTTTGTCCTCACTTCTTGGGTCCTTTTTTTGTAGTGGATGCCTTCAGGT
GATCCATTCAGTTTTTAGATTTCTAGTGTAGGTGTCTGGTTATGTAATTTGTATTTTGATGGCAAACTCTAGCTACCTCA
ATTGCAGCCAGTCATGTACAGTTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis