Browse Element(s) Details


OsAffx.29407.3.S1_x_at

Description tigr:9636.m02664
TID=OsAffx.29407.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g269908/11Response regulator receiver domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26970Os.46012.2.S1_x_at7/118+16339711..16345115retrotransposon protein, putative, unclassified
LOC_Os08g26970Os.27088.1.A1_x_at4/118+16339711..16345115retrotransposon protein, putative, unclassified
LOC_Os08g26970Os.46012.3.S1_x_at3/118+16339711..16345115retrotransposon protein, putative, unclassified
LOC_Os08g26980Os.31640.1.S1_at1/118+16349615..16350007hypothetical protein
LOC_Os08g26990OsAffx.29407.3.S1_x_at8/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.3.S1_at7/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g26990OsAffx.29407.1.S1_at2/118+16355631..16357485Response regulator receiver domain containing protein
LOC_Os08g27000Os.41695.15.S1_s_at11/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.2.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.3.S1_x_at7/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.5.S1_x_at2/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27000Os.41695.4.S1_x_at1/118+16360901..16367637Zinc knuckle family protein
LOC_Os08g27010Os.16772.1.S1_at11/118+16373296..16377474expressed protein
LOC_Os08g27020OsAffx.5946.1.S1_at11/118+16379839..16380353expressed protein
LOC_Os08g27030Os.35387.1.S1_at11/118+16380889..16385047Lipid phosphate phosphatase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29407.3.S1_x_at--702--10871Chr08:16355662..16355686 (25 bp)
TTGGCCCTGAGCTAGACAAGAAGAA
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--596--10732Chr08:16355695..16355719 (25 bp)
TTGAGAAGGCCAAGTCCAAGCTTCT
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--908--2731Chr08:16355730..16355754 (25 bp)
AAGAAGGCCGACATAGAGGAGAACA
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--233--1331NONE
AGAGGAGAACACTAGGGTGACTGCA
NONE
OsAffx.29407.3.S1_x_at--1000--5491NONE
GAACACTAGGGTGACTGCAGTAGAA
NONE
OsAffx.29407.3.S1_x_at--981--7091Chr08:16356917..16356941 (25 bp)
GTCATGCAAGCATTAGTATTTTTGG
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--46--1551NONE
AGCATTAGTATTTTTGGACTCGGAA
NONE
OsAffx.29407.3.S1_x_at--677--6031Chr08:16357075..16357099 (25 bp)
GAGATGACCGGCTATGACTTACTCA
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--340--1751Chr08:16357230..16357254 (25 bp)
ACCTAGACTGGTACATCTCCCGGTG
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--733--1391Chr08:16357234..16357258 (25 bp)
AGACTGGTACATCTCCCGGTGATAA
LOC_Os08g26990
OsAffx.29407.3.S1_x_at--732--1951Chr08:16357236..16357260 (25 bp)
ACTGGTACATCTCCCGGTGATAATT
LOC_Os08g26990
Target Sequence 
TTGGCCCTGAGCTAGACAAGAAGAAGGCCAAACTTGAGAAGGCCAAGTCCAAGCTTCTTGAGCTGGAGAAGAAGGCCGAC
ATAGAGGAGAACACTAGGGTGACTGCAGTAGAAAGTGTCATGCAAGCATTAGTATTTTTGGACTCGGAACATGATGTGAA
CATGATTGTTAGTGACTATTGTATGCCAGAGATGACCGGCTATGACTTACTCATGGAAGTGAAGAAATCACCTAGACTGG
TACATCTCCCGGTGATAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29407.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis