Browse Element(s) Details


OsAffx.29407.1.S1_at

Description tigr:9636.m02861
TID=OsAffx.29407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Response regulator receiver domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2890010/11Response regulator receiver domain containing protein, expressed
LOC_Os08g289504/11Response regulator receiver domain containing protein
LOC_Os08g269902/11Response regulator receiver domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29407.1.S1_at--655--5331NONE
GAAGTCCCACATGTACGAAAGAGGA
NONE
OsAffx.29407.1.S1_at--946--3111Chr08:17544884..17544908 (25 bp)
AATTATCAAATACACGGTCACTAGT
LOC_Os08g28900
OsAffx.29407.1.S1_at--679--3971Chr08:17544898..17545024 (25 bp)
CGGTCACTAGTGATACTGTCCATTT
LOC_Os08g28900
OsAffx.29407.1.S1_at--398--3892Chr08:17581250..17581272 (23 bp)
CTGTCCATTTTCCTCAACAACAATT
LOC_Os08g28950
OsAffx.29407.1.S1_at--413--3372Chr08:17545053..17545077 (25 bp)
CACCAAAAGTTTGCAATGTCGTCCC
LOC_Os08g28900
OsAffx.29407.1.S1_at--1069--3493Chr08:17581313..17581337 (25 bp)
CATGTGCTTGTTGTGGATGATACCC
LOC_Os08g28950
OsAffx.29407.1.S1_at--795--7991Chr08:17545094..17545118 (25 bp)
GGATGATACCCATGTTGATCGCCAT
LOC_Os08g28900
OsAffx.29407.1.S1_at--426--732Chr08:17545105..17545129 (25 bp)
ATGTTGATCGCCATGTTGTTTCCAT
LOC_Os08g28900
OsAffx.29407.1.S1_at--409--6853Chr08:17581355..17581379 (25 bp)
GTTTCCATGGCCTTAATGCGCCATA
LOC_Os08g28950
OsAffx.29407.1.S1_at--708--2991Chr08:17545136..17545283 (25 bp)
AATGCGCCATAATGTCCGAGTGACT
LOC_Os08g28900
OsAffx.29407.1.S1_at--347--9831Chr08:17545596..17545620 (25 bp)
TAAACTGGCACATCTCCCGGTTGTA
LOC_Os08g28900
Target Sequence 
GAAGTCCCACATGTACGAAAGAGGACAAATCCATCAATCATTATACATTGTATGGTATATCAAAATTATCAAATACACGG
TCACTAGTGATACTGTCCATTTTCCTCAACAACAATTCAAAGTAACTCTACACCAAAAGTTTGCAATGTCGTCCCCCCAT
GTGCTTGTTGTGGATGATACCCATGTTGATCGCCATGTTGTTTCCATGGCCTTAATGCGCCATAATGTCCGAGTGACTGC
AGTAGAAAGTGTCATGCAAGCATTGATGTTTTTGGACTCGGAACATGATGTGGACATGATTGTTAGTGACTACTGTATGC
CAGACATGACCGGCTATAACCTACTCATGGAAGTGAAGAAATCACCTAAACTGGCACATCTCCCGGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis