Browse Element(s) Details


OsAffx.5971.1.S1_at

Description tigr:9636.m02863
TID=OsAffx.5971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g289208/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5971.1.S1_at--229--6051Chr08:17552267..17552291 (25 bp)
GAGATTGGGTCTGTTCAACCGAGCA
LOC_Os08g28920
OsAffx.5971.1.S1_at--597--10851Chr08:17552263..17552287 (25 bp)
TTGGGTCTGTTCAACCGAGCATGGT
LOC_Os08g28920
OsAffx.5971.1.S1_at--955--4071Chr08:17552248..17552272 (25 bp)
CGAGCATGGTTGTTCAGATATGGTG
LOC_Os08g28920
OsAffx.5971.1.S1_at--424--491Chr08:17551032..17551056 (25 bp)
ATCGGTTTCACGTTCCAGCAAGTTT
LOC_Os08g28920
OsAffx.5971.1.S1_at--1113--7851Chr08:17551029..17551053 (25 bp)
GGTTTCACGTTCCAGCAAGTTTAAG
LOC_Os08g28920
OsAffx.5971.1.S1_at--1031--9671Chr08:17551025..17551049 (25 bp)
TCACGTTCCAGCAAGTTTAAGATGC
LOC_Os08g28920
OsAffx.5971.1.S1_at--328--9791NONE
TAAGATGCTGGCTGCACTAAGGAAT
NONE
OsAffx.5971.1.S1_at--659--9131NONE
TGCTGGCTGCACTAAGGAATTTTAC
NONE
OsAffx.5971.1.S1_at--1015--8231NONE
GGCTGCACTAAGGAATTTTACTGGG
NONE
OsAffx.5971.1.S1_at--678--5691Chr08:17550332..17550356 (25 bp)
GACTTTAGTCCGGATTGGCCTATGG
LOC_Os08g28920
OsAffx.5971.1.S1_at--800--10431Chr08:17550328..17550352 (25 bp)
TTAGTCCGGATTGGCCTATGGGCGT
LOC_Os08g28920
Target Sequence 
GAGATTGGGTCTGTTCAACCGAGCATGGTTGTTCAGATATGGTGGGGCATATGCAACAGAAACCAATCGGTTTCACGTTC
CAGCAAGTTTAAGATGCTGGCTGCACTAAGGAATTTTACTGGGGTCATAGCTAATGTGGGGCCAAAGGACTTTAGTCCGG
ATTGGCCTATGGGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis