Browse Element(s) Details


OsAffx.17217.1.S1_x_at

Description tigr:9636.m02860
TID=OsAffx.17217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2889011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0009986cellular_componentcell surface
GO:0030139cellular_componentendocytic vesicle
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17217.1.S1_x_at--901--7111Chr08:17540725..17540749 (25 bp)
GTCAGGCCACGCAACGTGCTCGTCG
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--701--4271Chr08:17540774..17540798 (25 bp)
CCTGCGGCGTCAGGGTCAGCGACTA
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--1024--1051Chr08:17540785..17540809 (25 bp)
AGGGTCAGCGACTACGGGCTGTCCA
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--78--4111Chr08:17540792..17540816 (25 bp)
GCGACTACGGGCTGTCCACCTTCCT
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--606--4571Chr08:17540864..17540888 (25 bp)
GCGCGGAGAACGACGTCTACATGTT
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--845--4131Chr08:17540865..17540889 (25 bp)
CGCGGAGAACGACGTCTACATGTTC
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--1124--9511Chr08:17540879..17540903 (25 bp)
TCTACATGTTCGGCGCGGTGCTCCT
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--350--2231Chr08:17541026..17541050 (25 bp)
ACAAGGCCGAGTCCCGCCTGCTCGC
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--839--9091Chr08:17541044..17541068 (25 bp)
TGCTCGCGCGGACGGCCAGGGTGGC
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--572--3471Chr08:17541165..17541189 (25 bp)
CAGGTCGCCGGAACACGACGTGGAC
LOC_Os08g28890
OsAffx.17217.1.S1_x_at--490--971Chr08:17541197..17541221 (25 bp)
AGGAGCGGTTCAGTGGGTGCCTTCT
LOC_Os08g28890
Target Sequence 
GTCAGGCCACGCAACGTGCTCGTCGACGCGGCCGCCGCGGCGCGTGGCCCCTGCGGCGTCAGGGTCAGCGACTACGGGCT
GTCCACCTTCCTCCACAGCGACGACGGCGACGGCGACGACCACGGCCGCCTGGACGCCCGCGCGGAGAACGACGTCTACA
TGTTCGGCGCGGTGCTCCTCCACCTCCTCACCGGCCGGCAATGGGACGGCGGCCGGCTGGCGCACTGGGCGCTCCCGCTG
ATACGCGCCGGCCCGCCGGCGCTGGCGGAGGTGCTCGACGAGCGCGCCGGCAAGCCGGCGGACAAGGCCGAGTCCCGCCT
GCTCGCGCGGACGGCCAGGGTGGCGCTGGCGTGCGTGGCGAACGACGGGCGCAGCCGGCCGCGGATGGCGGAGGTGTCCG
CCATCCTCGACGACGTGGAGGCGGCGTACCGGCGCCGCGGCAGGTCGCCGGAACACGACGTGGACGGCGGCGAGGAGCGG
TTCAGTGGGTGCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis