Browse Element(s) Details


OsAffx.17216.1.S1_x_at

Description tigr:9636.m02859
TID=OsAffx.17216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Patatin-like phospholipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2888010/11Patatin-like phospholipase family protein
LOC_Os08g372101/11Patatin-like phospholipase family protein, expressed
LOC_Os08g371801/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17216.1.S1_x_at--703--7811Chr08:17532074..17532098 (25 bp)
GGTCTTCAATCTCATCGATGGAGGT
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--335--9531Chr08:17532083..17532107 (25 bp)
TCTCATCGATGGAGGTGTTGCTGCC
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--872--10711NONE
TTGCTGCCAACAATCCGACGTTGGT
NONE
OsAffx.17216.1.S1_x_at--150--3031Chr08:17533121..17533140 (20 bp)
AATCCGACGTTGGTGGCGATGACCC
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--398--10851Chr08:17533125..17533149 (25 bp)
TTGGTGGCGATGACCCACGTGAGCA
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--707--1811Chr08:17533137..17533161 (25 bp)
ACCCACGTGAGCAAGCAGATCCTGC
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--320--5713Chr08:17533197..17533221 (25 bp)
GACTACGGCAAGTTCATGGTGCTCT
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--495--2831Chr08:17533206..17533230 (25 bp)
AAGTTCATGGTGCTCTCCCTCAGCA
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--220--8031Chr08:17533252..17533276 (25 bp)
GGAGGTCATTCGACGCCGACGAGTC
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--594--8851Chr08:17533333..17533357 (25 bp)
TGATCGACAGCTTCGCGCAGTCCAG
LOC_Os08g28880
OsAffx.17216.1.S1_x_at--25--4911Chr08:17533609..17533633 (25 bp)
GCTTCGCCCGGATGCTGTCGATGGA
LOC_Os08g28880
Target Sequence 
GGTCTTCAATCTCATCGATGGAGGTGTTGCTGCCAACAATCCGACGTTGGTGGCGATGACCCACGTGAGCAAGCAGATCC
TGCTGGGGAACCAGGACTTCTTCCCGATCAAACCGGCCGACTACGGCAAGTTCATGGTGCTCTCCCTCAGCACCGGCTCG
GCCAAGGTGGAGGGGAGGTCATTCGACGCCGACGAGTCTGGCCGGTGGGGCCTCCTCGGCTGGCTCCGCAACGACGGCGG
CTCGGCGCCGCCGCTGATCGACAGCTTCGCGCAGTCCAGCTCCGACCTCGTCGACATCCACGCCTCCGTGCTCTTCCAGG
CGCTCCGCTGCGACCGCCACTACCTCCGCATCCAGGACGACGACCTCACCGGCGACGCCGCTTCCGTCGACGTGGCCACG
CCGGAGAACCTCCGCGCGCTCGCCGGCGCCGGGGCCGCGCTGCTGCGGAGGCAGGCGTGCAGGGTGGACGTGGAGACCGG
CAGGAACGTGGCCGACGCCGGCAGGGGCACCAACGAGGAGGAGCTGGCGCGCTTCGCCCGGATGCTGTCGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17216.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis