Browse Element(s) Details


Os.15459.1.S1_at

Description gb:AK101135.1
DB_XREF= gi:32986344
TID=Os.15459.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026G16, full insert sequence.
FL= gb:AK101135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g288607/11coenzyme A diphosphatase NUDT11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15459.1.S1_at--430--5951Chr08:17513390..17513414 (25 bp)
GAGAACCAAAAGTACTTAATCTGGG
LOC_Os08g28860
Os.15459.1.S1_at--507--3871Chr08:17513557..17513581 (25 bp)
CTGTTAACTTACTATGGAGACTCAA
LOC_Os08g28860
Os.15459.1.S1_at--1128--3691Chr08:17513568..17513592 (25 bp)
CTATGGAGACTCAATTATACCGATT
LOC_Os08g28860
Os.15459.1.S1_at--923--231Chr08:17513637..17513661 (25 bp)
ATATATATTTTCTATTCTTTGCACC
LOC_Os08g28860
Os.15459.1.S1_at--327--10771Chr08:17513695..17513719 (25 bp)
TTGATGCTGAGTTATCTGAGTAACC
LOC_Os08g28860
Os.15459.1.S1_at--1100--8671Chr08:17513801..17513825 (25 bp)
TGTGTTGAGTGCGTTGTTCAGTCAC
LOC_Os08g28860
Os.15459.1.S1_at--636--6751Chr08:17513816..17513841 (25 bp)
GTTCAGTCACTCATTAGGATCAGAT
LOC_Os08g28860
Os.15459.1.S1_at--7--9651NONE
TCAGATGTTTGTGAAAACCTACCCA
NONE
Os.15459.1.S1_at--516--2371NONE
AAACCTACCCAATTGCTGATACTGT
NONE
Os.15459.1.S1_at--975--3151NONE
AATTGCTGATACTGTTGATGCTCCA
NONE
Os.15459.1.S1_at--678--8811NONE
TGTTGATGCTCCATTGTCTCCCTTC
NONE
Target Sequence 
GAGAACCAAAAGTACTTAATCTGGGNCCTGACNTGCACNGCATCTTAATTCATGCTGCTTCANTTGTATACCANGCGCCC
ACCNAGACTTTCCCGAGCGAAGAGTACANTTTCAACCTGCCNAAGTTCTGAAGGGNTCNTTGGCAGTGCCANTGGATCAG
CATATACTAAATACTGTTAACTTACTATGGAGACTCAATTATACCGATTGAAGAGCATNGCGGAAAAAAAANTCCCNAAA
AAGGTTGCTGGAGAATATATATTTTCTATTCTTTGCACCNTTCTTTACANAACACGCTGATGTTAACANTTTGTTGATGC
TGAGTTATCTGAGTAACCNCCNTTTGCTCCCTGTTGATGTCACCNAACNGTTGCACTAATACNGTTGGGTTTTATATGTG
AAGTATAAANCCAATTTAGTGTGTTGAGTGCGTTGTTCAGTCACTCATTAGGATCAGATGTTTGTGAAAACCTACCCAAT
TGCTGATACTGTTGATGCTCCATTGTCTCCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis