Browse Element(s) Details


Os.53997.1.S1_at

Description gb:AK101199.1
DB_XREF= gi:32986408
TID=Os.53997.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030L22, full insert sequence.
FL= gb:AK101199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2883011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28780OsAffx.5970.1.S1_at11/118+17471719..17472278Skp1 family, dimerisation domain containing protein
LOC_Os08g28790Os.55488.1.S1_at11/118+17480729..17481529Dirigent-like protein, expressed
LOC_Os08g28800Os.38424.1.S1_at2/118+17485050..17485559SKP1-like protein 1A, putative
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53997.1.S1_at--1155--2691Chr08:17497751..17497775 (25 bp)
AAGCTAATTGATTCTATGCCATTTG
LOC_Os08g28830
Os.53997.1.S1_at--71--10151Chr08:17497765..17497789 (25 bp)
TATGCCATTTGAACCAGATGCCATG
LOC_Os08g28830
Os.53997.1.S1_at--935--6351Chr08:17497781..17497805 (25 bp)
GATGCCATGGTATGGATGACCCTAT
LOC_Os08g28830
Os.53997.1.S1_at--871--8931Chr08:17497797..17497821 (25 bp)
TGACCCTATTGGGTGCTTGCAGAAT
LOC_Os08g28830
Os.53997.1.S1_at--606--2031Chr08:17497837..17497861 (25 bp)
ACTAGCAAGCGATGTGGCCAGCCAT
LOC_Os08g28830
Os.53997.1.S1_at--238--8671Chr08:17497867..17497891 (25 bp)
TGTGGCAGAACCTAGACAGCACTCT
LOC_Os08g28830
Os.53997.1.S1_at--250--10031Chr08:17497879..17497903 (25 bp)
TAGACAGCACTCTACCTATGTTCTC
LOC_Os08g28830
Os.53997.1.S1_at--125--10131Chr08:17497895..17497919 (25 bp)
TATGTTCTCCTGTCCAGCATGTATT
LOC_Os08g28830
Os.53997.1.S1_at--89--6571Chr08:17497977..17498001 (25 bp)
GATTAAGCAAAGTCCCTGGGTGGAG
LOC_Os08g28830
Os.53997.1.S1_at--968--10211Chr08:17498137..17498161 (25 bp)
TATTCTCATGATAACTTCCAGTGGC
LOC_Os08g28830
Os.53997.1.S1_at--880--7431Chr08:17498193..17498217 (25 bp)
GTGTACGATATGTTCTCATCCAGAT
LOC_Os08g28830
Target Sequence 
AAGCTAATTGATTCTATGCCATTTGAACCAGATGCCATGGTATGGATGACCCTATTGGGTGCTTGCAGAATNCATGGGAA
TGTGGAACTAGCAAGCGATGTGGCCAGCCATCTATTTGTGGCAGAACCTAGACAGCACTCTACCTATGTTCTCCTGTCCA
GCATGTATTCTGGTCTTGGGATGTGGAGTGATAGGGCAACAGTGCAGAGGGTAATGAAGAAACGAGGATTAAGCAAAGTC
CCTGGGTGGAGCTNGATTGAGGTGAAGAATGAGGTGCATTCTTTCAATGCAGAGGATAAATCACACCCAAAGATGGATGA
GATCTATGAGATGTTAAGGGTGTTGCTTCAAGTAGAGCAGATGCTTTCTAATTGTGAAGATGAAGATATTCTCATGATAA
CTTCCAGTGGCATATGAACTTGAATTTTGATAGTCCACTATTGTGTACGATATGTTCTCATCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis