Browse Element(s) Details


Os.55488.1.S1_at

Description gb:AK108186.1
DB_XREF= gi:32993395
TID=Os.55488.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B09, full insert sequence.
FL= gb:AK108186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2879011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28750Os.46314.3.S1_at4/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750OsAffx.265.1.S1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750Os.41248.2.A1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28760NANA8+17460906..17463748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28770NANA8+17465103..17470360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g28780OsAffx.5970.1.S1_at11/118+17471719..17472278Skp1 family, dimerisation domain containing protein
LOC_Os08g28790Os.55488.1.S1_at11/118+17480729..17481529Dirigent-like protein, expressed
LOC_Os08g28800Os.38424.1.S1_at2/118+17485050..17485559SKP1-like protein 1A, putative
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55488.1.S1_at--252--1691Chr08:17481004..17481028 (25 bp)
ACCTCGTCACGGAGGGCCCGAGCAT
LOC_Os08g28790
Os.55488.1.S1_at--856--4151Chr08:17481048..17481072 (25 bp)
CGCGCGCAGGGCACGTACATGCTCA
LOC_Os08g28790
Os.55488.1.S1_at--282--8631Chr08:17481094..17481118 (25 bp)
TGGTGGTTGCCATCACCGTGGCGCT
LOC_Os08g28790
Os.55488.1.S1_at--35--9451Chr08:17481273..17481297 (25 bp)
TCGGAGATCCACATGGCGCTGGAGC
LOC_Os08g28790
Os.55488.1.S1_at--471--5771Chr08:17481333..17481357 (25 bp)
GACGACGCGGTAGCCACCGAGTAAG
LOC_Os08g28790
Os.55488.1.S1_at--349--8751Chr08:17481367..17481391 (25 bp)
TGTACTCCTACGTGGATCGTTTGAT
LOC_Os08g28790
Os.55488.1.S1_at--908--6391Chr08:17481381..17481405 (25 bp)
GATCGTTTGATTCCGCCATGGATAT
LOC_Os08g28790
Os.55488.1.S1_at--531--831Chr08:17481398..17481422 (25 bp)
ATGGATATCTATCCGGCCGGGAGCT
LOC_Os08g28790
Os.55488.1.S1_at--823--8071Chr08:17481417..17481441 (25 bp)
GGAGCTCCCGTGCACTGCAGCTAGA
LOC_Os08g28790
Os.55488.1.S1_at--375--3851Chr08:17481431..17481455 (25 bp)
CTGCAGCTAGATTATACTCGTATTT
LOC_Os08g28790
Os.55488.1.S1_at--150--8311Chr08:17481503..17481527 (25 bp)
GGCTATGATCCTCTGATCATTACTA
LOC_Os08g28790
Target Sequence 
ACCTCGTCACGGAGGGCCCGAGCATCGCCTCCGCCGCCGTCGGCCGCGCGCAGGGCACGTACATGCTCAGCTCCCAGCGC
GAGGCGGTGCTGGTGGTTGCCATCACCGTGGCGCTCACCTCGGCCGGGGGCCCCTACAACGGGAGCAACCTCGTCATCGC
CGGGCGCGACAGGGTGCGCGACGAGACGAGGGAGCTCGCGGTGGTCGGCGGCACCGGCGCGCTCCGGGGCGCCGCCGGGT
ACGTGCTGTGGAGGACGGCCAAGGTGTGGTCGGAGATCCACATGGCGCTGGAGCTCGACGTGCACGCGTCCGTGCCGGCG
ACGGCAGACGACGACGCGGTAGCCACCGAGTAAGAGAGATTATTGTACTCCTACGTGGATCGTTTGATTCCGCCATGGAT
ATCTATCCGGCCGGGAGCTCCCGTGCACTGCAGCTAGATTATACTCGTATTTATTTGTTGTGCTTTTAACTTTTTGTTTC
CTTACAAGAAATAAAAAGAGGCTATGATCCTCTGATCATTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis