Browse Element(s) Details


OsAffx.5970.1.S1_at

Description tigr:9636.m02849
TID=OsAffx.5970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinetochore protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2878011/11Skp1 family, dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28740NANA8+17448264..17450288expressed protein
LOC_Os08g28750Os.46314.3.S1_at4/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750OsAffx.265.1.S1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28750Os.41248.2.A1_at1/118+17452803..17459530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28760NANA8+17460906..17463748transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g28770NANA8+17465103..17470360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g28780OsAffx.5970.1.S1_at11/118+17471719..17472278Skp1 family, dimerisation domain containing protein
LOC_Os08g28790Os.55488.1.S1_at11/118+17480729..17481529Dirigent-like protein, expressed
LOC_Os08g28800Os.38424.1.S1_at2/118+17485050..17485559SKP1-like protein 1A, putative
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5970.1.S1_at--558--1791Chr08:17472039..17472063 (25 bp)
ACCGACAGCTCCACGAAGACCTCTG
LOC_Os08g28780
OsAffx.5970.1.S1_at--565--1371Chr08:17472055..17472079 (25 bp)
AGACCTCTGCCCCTAAGGCTAGCAA
LOC_Os08g28780
OsAffx.5970.1.S1_at--63--3811Chr08:17472061..17472085 (25 bp)
CTGCCCCTAAGGCTAGCAAGGAGGA
LOC_Os08g28780
OsAffx.5970.1.S1_at--76--9411Chr08:17472109..17472133 (25 bp)
TCGTCAACGTCGATAAGACGATGCT
LOC_Os08g28780
OsAffx.5970.1.S1_at--384--2771Chr08:17472123..17472147 (25 bp)
AAGACGATGCTGGTTGGCTTGATTT
LOC_Os08g28780
OsAffx.5970.1.S1_at--471--10391Chr08:17472145..17472169 (25 bp)
TTTTGGCTGCAAACTACTTGAATGT
LOC_Os08g28780
OsAffx.5970.1.S1_at--542--2531Chr08:17472156..17472180 (25 bp)
AACTACTTGAATGTGAAGGACCTAC
LOC_Os08g28780
OsAffx.5970.1.S1_at--694--8991Chr08:17472169..17472193 (25 bp)
TGAAGGACCTACTAGATCTGACCTG
LOC_Os08g28780
OsAffx.5970.1.S1_at--109--8931Chr08:17472187..17472211 (25 bp)
TGACCTGCCAGCATGCCGTGGACTT
LOC_Os08g28780
OsAffx.5970.1.S1_at--692--4411Chr08:17472193..17472217 (25 bp)
GCCAGCATGCCGTGGACTTGATCAA
LOC_Os08g28780
OsAffx.5970.1.S1_at--793--1531Chr08:17472196..17472220 (25 bp)
AGCATGCCGTGGACTTGATCAAAGA
LOC_Os08g28780
Target Sequence 
ACCGACAGCTCCACGAAGACCTCTGCCCCTAAGGCTAGCAAGGAGGAGCTCAAGAGCTTCGATGCCAAGTTCGTCAACGT
CGATAAGACGATGCTGGTTGGCTTGATTTTGGCTGCAAACTACTTGAATGTGAAGGACCTACTAGATCTGACCTGCCAGC
ATGCCGTGGACTTGATCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis