Browse Element(s) Details


OsAffx.1766.1.S1_at

Description gb:NM_183933.1
DB_XREF= gi:34894993
GEN=B1088D01.19
TID=OsAffx.1766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088D01.19 (B1088D01.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g289201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28880OsAffx.17216.1.S1_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28880OsAffx.17216.1.S1_x_at10/118+17530775..17533679Patatin-like phospholipase family protein
LOC_Os08g28890OsAffx.17217.1.S1_x_at11/118+17540002..17541542protein kinase family protein, putative, expressed
LOC_Os08g28900OsAffx.29407.1.S1_at10/118+17544044..17545849Response regulator receiver domain containing protein, expressed
LOC_Os08g28920OsAffx.5971.1.S1_at8/118+17550294..17552445hypothetical protein
LOC_Os08g28920OsAffx.1766.1.S1_at1/118+17550294..17552445hypothetical protein
LOC_Os08g28930OsAffx.2069.1.S1_at1/118+17554333..17560815retrotransposon, putative, centromere-specific
LOC_Os08g28940OsAffx.17219.1.S1_at11/118+17566362..17570794F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1766.1.S1_at--940--2951Chr01:13368285..13368309 (25 bp)
AAGGCCTTTCACTTCTTGAATATAG
NONE
OsAffx.1766.1.S1_at--854--7951Chr01:13369148..13369475 (25 bp)
GGATCAGCAATTCCGGTCATTTCAC
NONE
OsAffx.1766.1.S1_at--1108--7811Chr01:13369466..13369489 (24 bp)
GGTCATTTCACATTATTCGTTCTAG
NONE
OsAffx.1766.1.S1_at--473--8992Chr01:13372299..13372323 (25 bp)
TGAAGCCTCCAAGCACAATACCGTA
NONE
OsAffx.1766.1.S1_at--485--2031Chr01:13372333..13372357 (25 bp)
ACTATCGTCGACCTCCAAAATTGTT
NONE
OsAffx.1766.1.S1_at--829--212Chr01:13372362..13372434 (25 bp)
ATTTGTCAGCTGTTCACATTCTTGC
NONE
OsAffx.1766.1.S1_at--349--411Chr01:13372473..13372497 (25 bp)
ATCAGTTTCACGTTTCAGCAAGTTC
NONE
OsAffx.1766.1.S1_at--350--2832Chr08:17548000..17548021 (22 bp)
AAGTTCAAGATGTCGGCTGCCACTG
NONE
OsAffx.1766.1.S1_at--904--5951Chr01:13373565..13373588 (24 bp)
GAGAATGTCTGTTCAGTACGACCAA
NONE
OsAffx.1766.1.S1_at--382--6671Chr01:13373602..13373626 (25 bp)
GTTGCATTATGTTCAGTACGACCAA
NONE
OsAffx.1766.1.S1_at--514--9731Chr01:13373634..13373658 (25 bp)
TAATTGGCCATAACGCAACGCTAAT
NONE
Target Sequence 
AAGGCCTTTCACTTCTTGAATATAGATTCATGTCAAAAACAAACTTCAAGGAGGAGTTGTCTTTGCAATAATACAATCCA
CTACATGGATCAGCAATTCCGGTCATTTCACATTATTCGTTCTAGACATGAAGCACCATTGGCTATAAATAACCGATGTT
GGATGAAGCCTCCAAGCACAATACCGTACATCCTCCTACTATCGTCGACCTCCAAAATTGTTCTGCATTTGTCAGCTGTT
CACATTCTTGCATATATCATTGTGTTCATACAAATATTTGTAGAAACCAATCAGTTTCACGTTTCAGCAAGTTCAAGATG
TCGGCTGCCACTGGGAGTGATGCGAAAAGTCAGCCATGATATTGGATTTCTTTTGATGCTTGGTGATAAAGGAGATTATT
ACCGAGATATGCTAATGAGAGCAAAAATAGAAAGGTCAATCGTTTTTGCAAGATCTGTAGAGAATGTCTGTTCAGTACGA
CCAATAGAACCATTAGCGTTGCATTATGTTCAGTACGACCAATGTATCTTAATTGGCCATAACGCAACGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis