Browse Element(s) Details


Os.34615.1.S1_at

Description gb:AK070753.1
DB_XREF= gi:32980776
TID=Os.34615.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023065H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023065H04, full insert sequence.
FL= gb:AK070753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2709010/1130S ribosomal protein S17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34615.1.S1_at--358--7091Chr08:16417481..16417505 (25 bp)
GTCAAGCGCACCTCCAAGTTCATGG
LOC_Os08g27090
Os.34615.1.S1_at--598--871Chr08:16417460..16417484 (25 bp)
ATGGCGCACGATGAGACCGAGGACT
LOC_Os08g27090
Os.34615.1.S1_at--1124--451NONE
ATCGGCGACCGGGTTAAGCTTGATC
NONE
Os.34615.1.S1_at--166--2711Chr08:16414005..16414029 (25 bp)
AAGCTTGATCCTTCTAGGCCCTTGA
LOC_Os08g27090
Os.34615.1.S1_at--681--5371Chr08:16413973..16413997 (25 bp)
GAAGCACTGGGTTGTTGCCGAGATT
LOC_Os08g27090
Os.34615.1.S1_at--198--6671Chr08:16413960..16413984 (25 bp)
GTTGCCGAGATTCTTCGTAGAGCTA
LOC_Os08g27090
Os.34615.1.S1_at--808--3731Chr08:16413938..16413962 (25 bp)
CTAAGGTGTATTCTCCATCAGCTGC
LOC_Os08g27090
Os.34615.1.S1_at--199--8771Chr08:16413783..16413807 (25 bp)
TGTAGTATCATCTTTGTGGCTCCCT
LOC_Os08g27090
Os.34615.1.S1_at--796--7531Chr08:16413768..16413792 (25 bp)
GTGGCTCCCTTCAAATGCACTCGTG
LOC_Os08g27090
Os.34615.1.S1_at--660--9711Chr08:16413717..16413741 (25 bp)
TCAACTCACTGAGGGTGCATCTTCA
LOC_Os08g27090
Os.34615.1.S1_at--381--6331Chr08:16413674..16413698 (25 bp)
GATGCAACAGACCATATCCATATGT
LOC_Os08g27090
Target Sequence 
GTCAAGCGCACCTCCAAGTTCATGGCGCACGATGAGACCGAGGACTGNAACATCGGCGACCGGGTTAAGCTTGATCCTTC
TAGGCCCTTGAGCAAAAGGAAGCACTGGGTTGTTGCCGAGATTCTTCGTAGAGCTAAGGTGTATTCTCCATCAGCTGCTG
CAGCAGCAGTNTCTGCTCAACCTGNTNNCACAGTTCAACAGGCAGAAGCTGCTAGCAAATCATAAACATAGACTCCTCTT
CTGCAATAAATGGACACTTTTTCGGGATTTTCTTTTATGTTGTGTAACTGTAGTATCATCTTTGTGGCTCCCTTCAAATG
CACTCGTGNTTTNTTGAACCNATGTGAATGGTGGTTATCAACTCACTGAGGGTGCATCTTCAAATACTTCGAAATTCATG
GATGCAACAGACCATATCCATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis