Browse Element(s) Details


OsAffx.29378.1.S1_at

Description tigr:9636.m02678
TID=OsAffx.29378.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130OsAffx.20733.1.A1_x_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130Os.56378.1.S1_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27140OsAffx.17180.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27140Os.11318.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29378.1.S1_at--697--5091Chr08:16426885..16426909 (25 bp)
GCACGCTGCGGGATCTGTTCGTCGC
LOC_Os08g27100
OsAffx.29378.1.S1_at--948--4371Chr08:16427353..16427377 (25 bp)
CCAATCAATCAATCTGACCCCAAAT
LOC_Os08g27100
OsAffx.29378.1.S1_at--247--5131Chr08:16427379..16427403 (25 bp)
GCAAATTCGCTCTAGTTTTACTCTG
LOC_Os08g27100
OsAffx.29378.1.S1_at--1130--4811Chr08:16427387..16427411 (25 bp)
GCTCTAGTTTTACTCTGCATGCATC
LOC_Os08g27100
OsAffx.29378.1.S1_at--740--3271Chr08:16427453..16427477 (25 bp)
CAAACTGCGACACGCTACGCTGCTA
LOC_Os08g27100
OsAffx.29378.1.S1_at--516--9951Chr08:16427468..16427492 (25 bp)
TACGCTGCTACAGGCCACGATGATC
LOC_Os08g27100
OsAffx.29378.1.S1_at--543--1491Chr08:16427527..16427551 (25 bp)
AGCAAAGCCATCATTACTACCACTG
LOC_Os08g27100
OsAffx.29378.1.S1_at--860--411Chr08:16427536..16427560 (25 bp)
ATCATTACTACCACTGTACTGCTCA
LOC_Os08g27100
OsAffx.29378.1.S1_at--56--1971Chr08:16427548..16427572 (25 bp)
ACTGTACTGCTCACTTGCCAAGAAT
LOC_Os08g27100
OsAffx.29378.1.S1_at--337--10071Chr08:16427672..16427696 (25 bp)
TAGTGGTAGCTCGTAGTACTCCGGT
LOC_Os08g27100
OsAffx.29378.1.S1_at--321--9971Chr08:16427678..16427702 (25 bp)
TAGCTCGTAGTACTCCGGTCGGGAT
LOC_Os08g27100
Target Sequence 
GCACGCTGCGGGATCTGTTCGTCGCGTCGCCGGAGGCGGCGCGACGCCGCGGCGGCGATGACGACGAAGGTGGGGGCATT
GGCGGCTTCAGGTCGGGTCATGGCGGCGGAGGCGGAGGCGGCGGTGGAGGCAGGAGGAGATTTGCCGCTGTGAATATGGA
ATACCAAATCACCACCATCACCCAATCAATCAATCTGACCCCAAATTGCAAATTCGCTCTAGTTTTACTCTGCATGCATC
ATCAGTTCATCACAAATTCACCATTTCTTTTCTCCTCTCCTCAAACTGCGACACGCTACGCTGCTACAGGCCACGATGAT
CTTGTCATCATCATCATCAGCACAGCAGCAGCAGCAGCAAAGCCATCATTACTACCACTGTACTGCTCACTTGCCAAGAA
TCCATGGCCATGGCCGCCGGAGTCAACGGAGGAGGTAGTGGTAGCTCGTAGTACTCCGGTCGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis