Browse Element(s) Details


Os.56378.1.S1_at

Description gb:AK109950.1
DB_XREF= gi:32995159
TID=Os.56378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-159-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A05, full insert sequence.
FL= gb:AK109950.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g271301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130OsAffx.20733.1.A1_x_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130Os.56378.1.S1_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27140OsAffx.17180.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27140Os.11318.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed
LOC_Os08g27160OsAffx.17181.1.S1_at11/118+16454313..16454907hypothetical protein
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56378.1.S1_at--171--8651NONE
TGAGGACGTACCTCTTCTCGTACTC
NONE
Os.56378.1.S1_at--496--3931NONE
CGGCGACTTTCGACGTGCAGCAGAA
NONE
Os.56378.1.S1_at--641--3471NONE
CAGGTCAAGGCGATGGTGTCCAAGA
NONE
Os.56378.1.S1_at--1128--2791NONE
AAGATGATCTACAACGACGAGCTCG
NONE
Os.56378.1.S1_at--1154--4791NONE
GCTCGACCCCAAGGCGAATGTGGTG
NONE
Os.56378.1.S1_at--820--8611Chr08:16447006..16447032 (23 bp)
TGGTGAGCTTTCACAGGCTCGAGCT
LOC_Os08g27130
Os.56378.1.S1_at--171--8151NONE
GGACAAGGCCAACTCGATGCTCGAG
NONE
Os.56378.1.S1_at--787--3151NONE
AATTCCAGGCCCTCGGTCAGAAGGT
NONE
Os.56378.1.S1_at--704--9651NONE
TCAGAAGGTCTAGTGCTCTGCCATC
NONE
Os.56378.1.S1_at--1153--531NONE
ATCCCTTGGTCGCTTGACATGTTGT
NONE
Os.56378.1.S1_at--582--2351NONE
AAAGCTCCGGAGCATGCACGTCTAG
NONE
Target Sequence 
TGAGGACGTACCTCTTCTCGTACTCGGCGTACTACGAGTCGGTGTCGCTCGCGCATCTGGCGGCGACTTTCGACGTGCAG
CAGAAGCAGGTCAAGGCGATGGTGTCCAAGATGATCTACAACGACGAGCTCGCCGCGTCGCTCGACCCCAAGGCGAATGT
GGTGAGCTTTCACAGGCTCGAGCTCACCAAGGTGCAGCAGCTCGCCGCGACGCTGGCGGACAAGGCCAACTCGATGCTCG
AGCAGAACGAGCGTCTGCTCGACGCCAAGCTCGGCGAGGGCAAGGAGCAGAGGAGCTCCGGCGGCGACCGCGAGCGCGAC
GGCGGCCAGGCGGGCGGCAGGAGGGAGAGGAGAGGCGGCGCGTCCGCGCGTGGAAGAGGCCGCGGCAGGGGCAGGGCACA
ACAATTCCAGGCCCTCGGTCAGAAGGTCTAGTGCTCTGCCATCCCTTGGTCGCTTGACATGTTGTTGTTTTCCCCCACCA
TCCCCAAAAGCTCCGGAGCATGCACGTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis