Browse Element(s) Details


OsAffx.5948.1.S1_at

Description tigr:9636.m02685
TID=OsAffx.5948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2717011/11calmodulin-binding protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130OsAffx.20733.1.A1_x_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130Os.56378.1.S1_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27140OsAffx.17180.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27140Os.11318.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed
LOC_Os08g27160OsAffx.17181.1.S1_at11/118+16454313..16454907hypothetical protein
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5948.1.S1_at--377--6051Chr08:16462627..16462651 (25 bp)
GAGATTAAATTCAACCCCGTAGGAG
LOC_Os08g27170
OsAffx.5948.1.S1_at--92--111Chr08:16462668..16462692 (25 bp)
ATTCGGCGGTCGGATGTGCTCTTTG
LOC_Os08g27170
OsAffx.5948.1.S1_at--1041--7311Chr08:16462683..16462707 (25 bp)
GTGCTCTTTGCATGAACTGCTTCCA
LOC_Os08g27170
OsAffx.5948.1.S1_at--802--7791Chr08:16462844..16462868 (25 bp)
GGTCAGCCAAGCATACCAACAGTGG
LOC_Os08g27170
OsAffx.5948.1.S1_at--1099--2351Chr08:16462937..16462961 (25 bp)
AAAGCCCATGATTTCTTCAGGCATG
LOC_Os08g27170
OsAffx.5948.1.S1_at--933--2711Chr08:16463125..16463149 (25 bp)
AAGCATGATCAGCTCTGCATCTCAG
LOC_Os08g27170
OsAffx.5948.1.S1_at--266--5611Chr08:16463165..16463189 (25 bp)
GACAGCTTGGGAACTGCAACAACCT
LOC_Os08g27170
OsAffx.5948.1.S1_at--886--1491Chr08:16463219..16463243 (25 bp)
AGCACTCTAGAACCTGCATCAACTG
LOC_Os08g27170
OsAffx.5948.1.S1_at--376--4971Chr08:16463234..16463258 (25 bp)
GCATCAACTGTTCCAGATTCTGCTT
LOC_Os08g27170
OsAffx.5948.1.S1_at--130--4891Chr08:16463255..16463279 (25 bp)
GCTTTGTACAGCTGGAATTCGGGCA
LOC_Os08g27170
OsAffx.5948.1.S1_at--349--7591Chr08:16463275..16463299 (25 bp)
GGGCATGGCTGCTGATGATCACTTC
LOC_Os08g27170
Target Sequence 
GAGATTAAATTCAACCCCGTAGGAGAGATCTTAGCAGTGAGATTCGGCGGTCGGATGTGCTCTTTGCATGAACTGCTTCC
ACACCAAATGGTCCAAATCAAGCAATTGGTCAGCCAAGCATACCAACAGTGGGATCAGATGGAGGAAGTGCAGAATGAGA
TGGCACTTGTTGATAAAAGCTTAATTCCATTTCATGATGAAAAGCCCATGATTTCTTCAGGCATGCCAAGCTATATCAAT
CAAGCAGAGGGATTGATGGAGAATTCAGGATGGGAGCCAAGTGAGATGAGCCAGGAAAGCATGATCAGCTCTGCATCTCA
GAATGCCATGTATGTTGACAGCTTGGGAACTGCAACAACCTCAACTGCTGAAATGGTGACCAATAACATCAGCACTCTAG
AACCTGCATCAACTGTTCCAGATTCTGCTTTGTACAGCTGGAATTCGGGCATGGCTGCTGATGATCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis