Browse Element(s) Details


OsAffx.17181.1.S1_at

Description tigr:9636.m02684
TID=OsAffx.17181.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2716011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130OsAffx.20733.1.A1_x_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130Os.56378.1.S1_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27140OsAffx.17180.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27140Os.11318.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed
LOC_Os08g27160OsAffx.17181.1.S1_at11/118+16454313..16454907hypothetical protein
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17181.1.S1_at--633--9571Chr08:16454392..16454416 (25 bp)
TCTTCCCACAGCAGCAAATTGCCGA
LOC_Os08g27160
OsAffx.17181.1.S1_at--610--2231Chr08:16454407..16454430 (24 bp)
AAATTGCCGATCGTGGCCTCAGGGC
LOC_Os08g27160
OsAffx.17181.1.S1_at--1038--4091Chr08:16454520..16454544 (25 bp)
CGACATCTACTGGAGGGACACATAT
LOC_Os08g27160
OsAffx.17181.1.S1_at--1079--2151Chr08:16454537..16454561 (25 bp)
ACACATATGTGGTGTCCGTGCCCTT
LOC_Os08g27160
OsAffx.17181.1.S1_at--650--7291Chr08:16454554..16454578 (25 bp)
GTGCCCTTCTTTGCGATGTTGTCCG
LOC_Os08g27160
OsAffx.17181.1.S1_at--257--6291Chr08:16454568..16454592 (25 bp)
GATGTTGTCCGCAGAGATGACGCTT
LOC_Os08g27160
OsAffx.17181.1.S1_at--1093--1291Chr08:16454582..16454606 (25 bp)
AGATGACGCTTGGATGGGCTGCCAA
LOC_Os08g27160
OsAffx.17181.1.S1_at--700--4751Chr08:16454599..16454623 (25 bp)
GCTGCCAAGGGTGCGTTTGCCACAA
LOC_Os08g27160
OsAffx.17181.1.S1_at--481--10691Chr08:16454615..16454639 (25 bp)
TTGCCACAAGCAACCTCTACTCGTT
LOC_Os08g27160
OsAffx.17181.1.S1_at--325--10531Chr08:16454638..16454746 (25 bp)
TTCACCACCGGTGACGGATATGAGC
LOC_Os08g27160
OsAffx.17181.1.S1_at--1118--2591Chr08:16454792..16454816 (25 bp)
AACCCAACGCCGAAGAGCGCGACGG
LOC_Os08g27160
Target Sequence 
TCTTCCCACAGCAGCAAATTGCCGATCGTGGCCTCAGGGCCTCCTTGACCTCTACTGGTCGCATCCGTGCCCGCGCGCTC
AACTACGACCCCGACATCTACTGGAGGGACACATATGTGGTGTCCGTGCCCTTCTTTGCGATGTTGTCCGCAGAGATGAC
GCTTGGATGGGCTGCCAAGGGTGCGTTTGCCACAAGCAACCTCTACTCGTTCACCACCGGTGACGGATATGAGCGCGTCA
CGGGAGTGGATGCTGTCGAGGAGCGGGTCAAGGAGGAGGAACCCAACGCCGAAGAGCGCGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis