Browse Element(s) Details


OsAffx.17180.1.S1_at

Description tigr:9636.m02682
TID=OsAffx.17180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2714011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.33601.3.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120Os.45173.1.S1_x_at3/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27120OsAffx.20631.1.S1_x_at2/118+16439409..16444489retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130OsAffx.20733.1.A1_x_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27130Os.56378.1.S1_at1/118+16445226..16447095retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27140OsAffx.17180.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27140Os.11318.1.S1_at11/118+16448490..16449680expressed protein
LOC_Os08g27150Os.49450.1.S1_at11/118+16449783..16453531CRS1, putative, expressed
LOC_Os08g27160OsAffx.17181.1.S1_at11/118+16454313..16454907hypothetical protein
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17180.1.S1_at--101--8631Chr08:16448751..16448961 (25 bp)
TGGGACCACGTCAAGATGGAAACTG
LOC_Os08g27140
OsAffx.17180.1.S1_at--284--831Chr08:16448952..16448976 (25 bp)
ATGGAAACTGTCATCCCTGAACGAT
LOC_Os08g27140
OsAffx.17180.1.S1_at--305--8731Chr08:16448960..16448984 (25 bp)
TGTCATCCCTGAACGATCTTGTGTT
LOC_Os08g27140
OsAffx.17180.1.S1_at--549--2591Chr08:16448971..16448995 (25 bp)
AACGATCTTGTGTTCCTCTGATTGC
LOC_Os08g27140
OsAffx.17180.1.S1_at--489--6431Chr08:16448974..16448998 (25 bp)
GATCTTGTGTTCCTCTGATTGCCAC
LOC_Os08g27140
OsAffx.17180.1.S1_at--240--8831Chr08:16448989..16449013 (25 bp)
TGATTGCCACCCTGATCGCATGCAT
LOC_Os08g27140
OsAffx.17180.1.S1_at--305--4991Chr08:16449006..16449030 (25 bp)
GCATGCATCCCTGACGAGCGAGAAA
LOC_Os08g27140
OsAffx.17180.1.S1_at--1047--9051Chr08:16449009..16449033 (25 bp)
TGCATCCCTGACGAGCGAGAAAATC
LOC_Os08g27140
OsAffx.17180.1.S1_at--824--4611Chr08:16449023..16449047 (25 bp)
GCGAGAAAATCTTTGGCATTTTCGT
LOC_Os08g27140
OsAffx.17180.1.S1_at--1000--10231Chr08:16449034..16449058 (25 bp)
TTTGGCATTTTCGTGTCCAGGACGT
LOC_Os08g27140
OsAffx.17180.1.S1_at--350--10291Chr08:16449042..16449066 (25 bp)
TTTCGTGTCCAGGACGTTGGGCTGA
LOC_Os08g27140
Target Sequence 
TGGGACCACGTCAAGATGGAAACTGTCATCCCTGAACGATCTTGTGTTCCTCTGATTGCCACCCTGATCGCATGCATCCC
TGACGAGCGAGAAAATCTTTGGCATTTTCGTGTCCAGGACGTTGGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis