Browse Element(s) Details


OsAffx.23646.1.S1_at

Description tigr:9629.m04182
TID=OsAffx.23646.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4344011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0008356biological_processasymmetric cell division
GO:0009860biological_processpollen tube growth
GO:0010103biological_processstomatal complex morphogenesis
GO:0016324cellular_componentapical plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0004872molecular_functionreceptor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23646.1.S1_at--305--4111Chr01:25183310..25183334 (25 bp)
CGACAACCGGATGCAGTTCACGACG
LOC_Os01g43440
OsAffx.23646.1.S1_at--546--1211Chr01:25183296..25183320 (25 bp)
AGTTCACGACGGTCCCCGGCGACAT
LOC_Os01g43440
OsAffx.23646.1.S1_at--270--1091Chr01:25183258..25183282 (25 bp)
AGGGCGCTGACGACGCTGGTCCTCT
LOC_Os01g43440
OsAffx.23646.1.S1_at--496--1591Chr01:25183101..25183125 (25 bp)
AGCTCCGCGTGGACGGCAACCGGCT
LOC_Os01g43440
OsAffx.23646.1.S1_at--772--8411Chr01:25183071..25183095 (25 bp)
GGCCGATCCCGTTCGGGAAGCAGAT
LOC_Os01g43440
OsAffx.23646.1.S1_at--468--551Chr01:25183066..25183090 (25 bp)
ATCCCGTTCGGGAAGCAGATGATGT
LOC_Os01g43440
OsAffx.23646.1.S1_at--207--8331Chr01:25183002..25183026 (25 bp)
GGCTCTGCTACGACGCCAAGCAGCA
LOC_Os01g43440
OsAffx.23646.1.S1_at--161--2731Chr01:25182985..25183009 (25 bp)
AAGCAGCAGGGCCTTGAGGGCGTCG
LOC_Os01g43440
OsAffx.23646.1.S1_at--260--5731Chr01:25182940..25182964 (25 bp)
GACTGCGACAGCGTCAGGAGCCGCA
LOC_Os01g43440
OsAffx.23646.1.S1_at--226--971Chr01:25182925..25182949 (25 bp)
AGGAGCCGCACGACGCAGCACCTGG
LOC_Os01g43440
OsAffx.23646.1.S1_at--223--10231Chr01:25182825..25182849 (25 bp)
TTTGTGTCGGGAGTTGGCACGTTTT
LOC_Os01g43440
Target Sequence 
CGACAACCGGATGCAGTTCACGACGGTCCCCGGCGACATCTTCGCCGGGCTCAGGGCGCTGACGACGCTGGTCCTCTCCG
GCATGGGGCTGGAAGGGTCGTTGCCGGAGTCGATCGGGGAGCTGGGCCACCTCCGGGTGCTGCGGCTGGACAACAACGAG
TTCACCGGGGTGATCCCGGCGAGCTTCCGGCGGCTGGAGCGGGCGAGCGAGCTCCGCGTGGACGGCAACCGGCTGGTGGG
GCCGATCCCGTTCGGGAAGCAGATGATGTGGCGGCTAGGCAAGAAGCTCCGCGTCGGCGGCAACGAGGGGCTCTGCTACG
ACGCCAAGCAGCAGGGCCTTGAGGGCGTCGTCGCGCTGGCCGGCGTCGCCGACTGCGACAGCGTCAGGAGCCGCACGACG
CAGCACCTGGGAGGCCGCCTGAGGAACACCGGCGGCTTGCCGGCGGCGGCGGCTGCTGCTCCCAGCGTCGGCGTCGGCGC
GGGCGTTTGTGTCGGGAGTTGGCACGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis