Browse Element(s) Details


OsAffx.32301.1.A1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=ccmFc
TID=OsAffx.32301.1
CNT=1
FEA=DNA_43
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome c biogenesis Fc (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=Cytochrome c biogenesis Fc
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g434101/11Calcium-dependent protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0007165biological_processsignal transduction
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32301.1.A1_at--176--7611Chr12:13349919..13349943 (25 bp)
GGGCACCTCATCTTGTCATTTTGTT
NONE
OsAffx.32301.1.A1_at--984--9591Chr12:13349934..13349958 (25 bp)
TCATTTTGTTGCTCATTCCCCTTAG
NONE
OsAffx.32301.1.A1_at--1043--1092Chr12:13349964..13349988 (25 bp)
AGTGTTTGGCCTTTACTTCGGAGCG
NONE
OsAffx.32301.1.A1_at--953--10631Chr07:15130519..15130540 (22 bp)
TTCGCTGACCTATCGCGTGGTAAAG
NONE
OsAffx.32301.1.A1_at--577--1551NONE
AGCTTCTCCCTATTTTGTCTGGTAA
NONE
OsAffx.32301.1.A1_at--973--3091NONE
AATAGGGCGGCTTGCTTTGACCAAC
NONE
OsAffx.32301.1.A1_at--378--10251NONE
TTTGACCAACACTCCACTTTTTGCT
NONE
OsAffx.32301.1.A1_at--719--3671NONE
CTTTTTGCTCTGTCCATGGAGCGTA
NONE
OsAffx.32301.1.A1_at--107--931NONE
AGGCACCAGTGGGAACATCTCTACT
NONE
OsAffx.32301.1.A1_at--543--2491NONE
AACATCTCTACTGACGAACCATTTC
NONE
OsAffx.32301.1.A1_at--318--3111Chr08:24626861..24626884 (24 bp)
AATAGTACGGGTGCTGCCGTGCCAC
NONE
Target Sequence 
GGGCACCTCATCTTGTCATTTTGTTGCTCATTCCCCTTAGGCCGAAGTGTTTGGCCTTTACTTCGGAGCGCCCGCTCACG
CTTCGCTGACCTATCGCGTGGTAAAGAGAAGAGAGTACGAAAGAATTGTAAACAGAGCAGACCGCAGAAAGATTCTAAAT
ATGACAAGTCCCCCATGGATTCGATAATAAGGAAATGAAGAACGGGAACGAAACGAAATAAAGCATTTCTAGCGGATGAG
CTTCTCCCTATTTTGTCTGGTAATAGAATAGGGCGGCTTGCTTTGACCAACACTCCACTTTTTGCTCTGTCCATGGAGCG
TATGAATTTCCTTGAATGTAGATAGACCAAAAAAGGGAATAAAGAGATAGGAATAGGAATTATAGTACCATTGGAAGAAG
AGGCACCAGTGGGAACATCTCTACTGACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32301.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis