Browse Element(s) Details


Os.6537.1.S1_at

Description gb:AK064316.1
DB_XREF= gi:32974334
TID=Os.6537.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.6537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.11 (P0501G01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C12, full insert sequence.
FL= gb:AK064316.1 gb:AK102399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4342011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein
LOC_Os01g43450OsAffx.3401.1.S1_at1/111+25187099..25187723hypothetical protein
LOC_Os01g43460Os.23040.1.S1_at11/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g43460Os.5608.3.S1_x_at1/111+25188447..25191121C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0045010biological_processactin nucleation
GO:0031209cellular_componentSCAR complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6537.1.S1_at--819--8291Chr01:25171461..25171485 (25 bp)
GGCTACAAAACCTGCATCGAGAGGT
LOC_Os01g43420
Os.6537.1.S1_at--1138--3591Chr01:25171256..25171280 (25 bp)
CATTGCCCAAGCATCTGCAGACAAA
LOC_Os01g43420
Os.6537.1.S1_at--332--9471Chr01:25171243..25171267 (25 bp)
TCTGCAGACAAACTTGGCCAGCTCT
LOC_Os01g43420
Os.6537.1.S1_at--185--8451Chr01:25171228..25171252 (25 bp)
GGCCAGCTCTGATTTTGCTATGCAT
LOC_Os01g43420
Os.6537.1.S1_at--133--671Chr01:25171046..25171066 (21 bp)
ATGAAGGATCAACCTGGTGTCAGGC
LOC_Os01g43420
Os.6537.1.S1_at--370--7751Chr01:25171031..25171055 (25 bp)
GGTGTCAGGCATCTATCGTCATTTA
LOC_Os01g43420
Os.6537.1.S1_at--312--6731Chr01:25171006..25171030 (25 bp)
GTTCTTTTGACAACCCAAGAGGGCG
LOC_Os01g43420
Os.6537.1.S1_at--463--8251Chr01:25170985..25171009 (25 bp)
GGCGTCAAATCCAAAAGGCTCCCCT
LOC_Os01g43420
Os.6537.1.S1_at--168--4191Chr01:25170965..25170989 (25 bp)
CCCCTCCGTACCAAAAGTATGCTAG
LOC_Os01g43420
Os.6537.1.S1_at--121--4031Chr01:25170900..25170924 (25 bp)
CGTTTCTGTTCGTTGATCAATTTCA
LOC_Os01g43420
Os.6537.1.S1_at--152--7191Chr01:25170807..25170831 (25 bp)
GTCTGTGTCTTGTATATTAGTGCTC
LOC_Os01g43420
Target Sequence 
GGCTACAAAACCTGCATCGAGAGGTAAGGAACCATCAACATCTCCATTGCCCAAGCATCTGCAGACAAACTTGGCCAGCT
CTGATTTTGCTATGCATAATGTTGGCATGAAGGATCAACCTGGTGTCAGGCATCTATCGTCATTTAGTTCTTTTGACAAC
CCAAGAGGGCGTCAAATCCAAAAGGCTCCCCTCCGTACCAAAAGTATGCTAGCTGCTTTCTTTGTCAAGCACAAGTCGGG
AAAGATGAAAAACGTTTCTGTTCGTTGATCAATTTCAAGCCTCCAGTTTGTCCAGCCCTGTCACAACGAAGTACAACCAC
GGAATTCAGATTACATCTACAATATGTCTGTGTCTTGTATATTAGTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis