Browse Element(s) Details


Os.32068.1.S1_at

Description gb:AK106203.1
DB_XREF= gi:32991412
TID=Os.32068.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative uroporphyrinogen decarboxylase (P0501G01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-F10, full insert sequence.
FL= gb:AK106203.1 gb:AK072290.1 gb:AK099135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4339011/11Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004853molecular_functionuroporphyrinogen decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32068.1.S1_at--130--1551Chr01:25152236..25152260 (25 bp)
AGCATTTCTATTTTCTCCATTACCA
LOC_Os01g43390
Os.32068.1.S1_at--145--10091Chr01:25151263..25151286 (24 bp)
TAGGGTTGTCAAATCAGCTGGTCCA
LOC_Os01g43390
Os.32068.1.S1_at--918--2511Chr01:25151223..25151247 (25 bp)
AACTTGGGCCATGGTGTTCTTGTAA
LOC_Os01g43390
Os.32068.1.S1_at--614--5411Chr01:25151187..25151211 (25 bp)
GAAGCTGTAGCTCATTTCTTTGATG
LOC_Os01g43390
Os.32068.1.S1_at--1059--6031Chr01:25151149..25151173 (25 bp)
GAGATATGACACACTTTTCCAAGGT
LOC_Os01g43390
Os.32068.1.S1_at--495--5871Chr01:25151106..25151130 (25 bp)
GAGCCTGTTGCTTAACAATGGCCAA
LOC_Os01g43390
Os.32068.1.S1_at--1030--391Chr01:25151062..25151086 (25 bp)
ATCAGCTGATCCATGGTGTACCATC
LOC_Os01g43390
Os.32068.1.S1_at--976--6971Chr01:25151045..25151069 (25 bp)
GTACCATCGTAGTTTTGTCTGCAAG
LOC_Os01g43390
Os.32068.1.S1_at--688--9751Chr01:25150937..25150961 (25 bp)
TAATAGCTGTATTCCTTCATCCATC
LOC_Os01g43390
Os.32068.1.S1_at--908--2931Chr01:25150895..25150919 (25 bp)
AAGGCATGCCACCTGGTTTTACAAG
LOC_Os01g43390
Os.32068.1.S1_at--1145--6791Chr01:25150847..25150871 (25 bp)
GTTTTGTCCATTTGTCTTTCTTGAG
LOC_Os01g43390
Target Sequence 
AGCATTTCTATTTTCTCCATTACCAGTACTGACCGATGAAATTCATAGGGTTGTCAAATCAGCTGGTCCAAAAGGTCATA
TACTAAACTTGGGCCATGGTGTTCTTGTAAAAACACCAGAAGAAGCTGTAGCTCATTTCTTTGATGTCACGAGGAGCTTG
AGATATGACACACTTTTCCAAGGTTGTGTTACTGAAGTTTTGGAGCCTGTTGCTTAACAATGGCCAATTGTCAGATATTT
TTTTTAATCAGCTGATCCATGGTGTACCATCGTAGTTTTGTCTGCAAGCTATGTTGCTCCTTTTGTTGGCCATGTCTTTG
TAGGAATATCACGATTCGTGACCAGGTCAATTCAATTTTATTCATTACTCTTAATAGCTGTATTCCTTCATCCATCCACA
AAACAAAAACAAAAAGGCATGCCACCTGGTTTTACAAGAAAAGCCAGAGTAGGTTCAAGGTGTTTTGTCCATTTGTCTTT
CTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis