Browse Element(s) Details


Os.53162.1.S1_s_at

Description gb:AK071118.1
DB_XREF= gi:32981141
TID=Os.53162.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53162 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082L01, full insert sequence.
FL= gb:AK071118.1 gb:AK105902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4778011/11Amino acid transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47730NANA4+28100135..28102625retrotransposon protein, putative, unclassified
LOC_Os04g47740NANA4+28104147..28110070retrotransposon protein, putative, unclassified
LOC_Os04g47750OsAffx.7232.1.S1_at4/114+28111406..28111864transposon protein, putative, Pong sub-class, expressed
LOC_Os04g47760NANA4+28112225..28114207transposon protein, putative, Pong sub-class
LOC_Os04g47770OsAffx.26509.1.S1_s_at11/114+28117492..28119587Cis-zeatin O-glucosyltransferase, putative, expressed
LOC_Os04g47780Os.20175.1.A1_x_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47780Os.53162.1.S1_s_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0005279molecular_functionamino acid-polyamine transporter activity
GO:0015171molecular_functionamino acid transporter activity
GO:0015173molecular_functionaromatic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53162.1.S1_s_at--867--3431Chr04:28122775..28122799 (25 bp)
CAGTTCTTCCGATGTGTAAGCGGTT
LOC_Os04g47780
Os.53162.1.S1_s_at--31--10651Chr04:28122769..28122793 (25 bp)
TTCCGATGTGTAAGCGGTTGACAGT
LOC_Os04g47780
Os.53162.1.S1_s_at--141--9791Chr04:28122759..28122783 (25 bp)
TAAGCGGTTGACAGTAATGCAGACA
LOC_Os04g47780
Os.53162.1.S1_s_at--468--7071Chr04:28122746..28122770 (25 bp)
GTAATGCAGACAATGCGCAGGCAAC
LOC_Os04g47780
Os.53162.1.S1_s_at--785--3191Chr04:28122736..28122760 (25 bp)
CAATGCGCAGGCAACGCAGCTAGTA
LOC_Os04g47780
Os.53162.1.S1_s_at--421--3711Chr04:28122717..28122741 (25 bp)
CTAGTAGCTCATGTGTATACATTGA
LOC_Os04g47780
Os.53162.1.S1_s_at--861--7431Chr04:28122705..28122729 (25 bp)
GTGTATACATTGAATTTAGCAGAAA
LOC_Os04g47780
Os.53162.1.S1_s_at--1127--5511Chr04:28122684..28122708 (25 bp)
GAAAAGAACATTCAGCTGGCATGCT
LOC_Os04g47780
Os.53162.1.S1_s_at--756--1431Chr04:28122680..28122704 (25 bp)
AGAACATTCAGCTGGCATGCTGATT
LOC_Os04g47780
Os.53162.1.S1_s_at--171--1631Chr04:28122671..28122695 (25 bp)
AGCTGGCATGCTGATTTTGGGCACG
LOC_Os04g47780
Os.53162.1.S1_s_at--600--3531Chr04:28122665..28122689 (25 bp)
CATGCTGATTTTGGGCACGGTTCAC
LOC_Os04g47780
Target Sequence 
CAGTTCTTCCGATGTGTAAGCGGTTGACAGTAATGCAGACAATGCGCAGGCAACGCAGCTAGTAGCTCATGTGTATACAT
TGAATTTAGCAGAAAAGAACATTCAGCTGGCATGCTGATTTTGGGCACGGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53162.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis