Browse Element(s) Details


OsAffx.26509.1.S1_s_at

Description tigr:9632.m04617
TID=OsAffx.26509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=UDP-glucoronosyl and UDP-glucosyl transferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4777011/11Cis-zeatin O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47710OsAffx.31069.1.S1_x_at1/114+28090281..28093340hypothetical protein
LOC_Os04g47720Os.49838.1.S1_at11/114+28095969..28097718Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g47730NANA4+28100135..28102625retrotransposon protein, putative, unclassified
LOC_Os04g47740NANA4+28104147..28110070retrotransposon protein, putative, unclassified
LOC_Os04g47750OsAffx.7232.1.S1_at4/114+28111406..28111864transposon protein, putative, Pong sub-class, expressed
LOC_Os04g47760NANA4+28112225..28114207transposon protein, putative, Pong sub-class
LOC_Os04g47770OsAffx.26509.1.S1_s_at11/114+28117492..28119587Cis-zeatin O-glucosyltransferase, putative, expressed
LOC_Os04g47780Os.20175.1.A1_x_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47780Os.53162.1.S1_s_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26509.1.S1_s_at--588--2931Chr04:28118778..28118802 (25 bp)
AAGGCAGGTCTCCTAGTGAGGCCAT
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--151--10691Chr04:28118823..28118847 (25 bp)
TTGCCGGCGGCCACTATACAGGAGG
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--80--2811Chr04:28118856..28118880 (25 bp)
AAGATGATGGCCTCCGATGAAGGAT
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--984--8011Chr04:28118942..28118966 (25 bp)
GGAGGACTTCATTGCTCACATCACA
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--488--71Chr04:28118952..28118976 (25 bp)
ATTGCTCACATCACAAGGTGATCGA
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--980--6371Chr04:28118971..28118995 (25 bp)
GATCGAAGAATAACCCCGTGTCAAA
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--1074--291Chr04:28119001..28119025 (25 bp)
ATACAGCTTTAAACTTTTTCAGTAG
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--779--3671Chr04:28119014..28119038 (25 bp)
CTTTTTCAGTAGTAGCAGTTTGTAT
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--359--211Chr04:28119050..28119074 (25 bp)
ATTTGAGTTAAGCAGGGTCTAGTAA
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--534--1211Chr04:28119114..28119138 (25 bp)
AGTTTTCAGTCCTACAAATCAAGTG
LOC_Os04g47770
OsAffx.26509.1.S1_s_at--443--3211Chr04:28119133..28119157 (25 bp)
CAAGTGACTCTATGGTTGAATCAAA
LOC_Os04g47770
Target Sequence 
AAGGCAGGTCTCCTAGTGAGGCCATGGGAGAAGCACGGCGAGGTTTTGCCGGCGGCCACTATACAGGAGGTGATCAAGAA
GATGATGGCCTCCGATGAAGGATTGGCGGTGCGGCAGCGCGCGAAGGCGCTCGGTGATGCCGTCCGTTCATCGCGCAATG
ATCTGGAGGACTTCATTGCTCACATCACAAGGTGATCGAAGAATAACCCCGTGTCAAAAAAAAATACAGCTTTAAACTTT
TTCAGTAGTAGCAGTTTGTATTGAATTTGACTATTTGAGTTAAGCAGGGTCTAGTAAAATAGTTGACTATTTGAGTTAAG
CAGGGTCTAGTAAAATAGTTTTCAGTCCTACAAATCAAGTGACTCTATGGTTGAATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26509.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis