Browse Element(s) Details


OsAffx.14318.1.S1_at

Description tigr:9632.m04619
TID=OsAffx.14318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4779011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47750OsAffx.7232.1.S1_at4/114+28111406..28111864transposon protein, putative, Pong sub-class, expressed
LOC_Os04g47760NANA4+28112225..28114207transposon protein, putative, Pong sub-class
LOC_Os04g47770OsAffx.26509.1.S1_s_at11/114+28117492..28119587Cis-zeatin O-glucosyltransferase, putative, expressed
LOC_Os04g47780Os.20175.1.A1_x_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47780Os.53162.1.S1_s_at11/114+28122611..28124173Amino acid transport protein, putative, expressed
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14318.1.S1_at--849--1712Chr04:28136457..28136481 (25 bp)
ACCACCATCGAGCTGCACGGATCGC
LOC_Os04g47790
OsAffx.14318.1.S1_at--287--5831Chr04:28136506..28136530 (25 bp)
GACCGATCTGTCTCCAAACAGATGA
LOC_Os04g47790
OsAffx.14318.1.S1_at--318--1791Chr04:28136507..28136531 (25 bp)
ACCGATCTGTCTCCAAACAGATGAG
LOC_Os04g47790
OsAffx.14318.1.S1_at--136--6411Chr04:28136510..28136534 (25 bp)
GATCTGTCTCCAAACAGATGAGCGG
LOC_Os04g47790
OsAffx.14318.1.S1_at--260--491Chr04:28136511..28136535 (25 bp)
ATCTGTCTCCAAACAGATGAGCGGC
LOC_Os04g47790
OsAffx.14318.1.S1_at--613--9471Chr04:28136512..28136536 (25 bp)
TCTGTCTCCAAACAGATGAGCGGCG
LOC_Os04g47790
OsAffx.14318.1.S1_at--173--8731Chr04:28136514..28136538 (25 bp)
TGTCTCCAAACAGATGAGCGGCGCT
LOC_Os04g47790
OsAffx.14318.1.S1_at--642--7171Chr04:28136515..28136539 (25 bp)
GTCTCCAAACAGATGAGCGGCGCTC
LOC_Os04g47790
OsAffx.14318.1.S1_at--814--9491Chr04:28136516..28136540 (25 bp)
TCTCCAAACAGATGAGCGGCGCTCC
LOC_Os04g47790
OsAffx.14318.1.S1_at--808--9211Chr04:28136518..28136542 (25 bp)
TCCAAACAGATGAGCGGCGCTCCAT
LOC_Os04g47790
OsAffx.14318.1.S1_at--783--4131Chr04:28136535..28136559 (25 bp)
CGCTCCATGGCTTGGTGCGCGAATG
LOC_Os04g47790
Target Sequence 
ACCACCATCGAGCTGCACGGATCGCCGTCGCACCCGCTTGCCCTCCCACGACCGATCTGTCTCCAAACAGATGAGCGGCG
CTCCATGGCTTGGTGCGCGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis