Browse Element(s) Details


Os.55989.1.S1_at

Description gb:AK109094.1
DB_XREF= gi:32994303
TID=Os.55989.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-A07, full insert sequence.
FL= gb:AK109094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4781010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55989.1.S1_at--309--5351Chr04:28151493..28151517 (25 bp)
GAAGATCACGGCTTTGCAGCAGATT
LOC_Os04g47810
Os.55989.1.S1_at--827--1471Chr04:28151476..28151500 (25 bp)
AGCAGATTGTGTCACCTTTCGGGAA
LOC_Os04g47810
Os.55989.1.S1_at--687--7951Chr04:28151331..28151355 (25 bp)
GGATACAGCGTCTGTTCTGTTGGAA
LOC_Os04g47810
Os.55989.1.S1_at--1086--9831NONE
TACAGTTATTCAGCCAACCGTATAT
NONE
Os.55989.1.S1_at--499--6831Chr04:28150612..28150636 (25 bp)
GTTTCCTGGACCTCTCAAGAATACT
LOC_Os04g47810
Os.55989.1.S1_at--1033--311Chr04:28150592..28150616 (25 bp)
ATACTGTGATAGCATCCTGCCGGAG
LOC_Os04g47810
Os.55989.1.S1_at--162--8311Chr04:28150562..28150586 (25 bp)
GGCTCCGGCGTACAGGAACTACTTT
LOC_Os04g47810
Os.55989.1.S1_at--706--5471Chr04:28150547..28150571 (25 bp)
GAACTACTTTTACCGATGAGCCCCA
LOC_Os04g47810
Os.55989.1.S1_at--787--10111Chr04:28150440..28150464 (25 bp)
TATGTTTTTCAGTCCCCATGTTATA
LOC_Os04g47810
Os.55989.1.S1_at--854--1331Chr04:28150346..28150370 (25 bp)
AGAGTGTCATATCTAGGTCCCTGAA
LOC_Os04g47810
Os.55989.1.S1_at--298--10812Chr04:28150292..28150316 (25 bp)
TTGTACTGCGTGTCATATATGTCCA
LOC_Os04g47810
Target Sequence 
GAAGATCACGGCTTTGCAGCAGATTGTGTCACCTTTCGGGAAGACGGATACAGCGTCTGTTCTGTTGGAAACCATAACCT
ACATCAAATTTCTTCATGAACAAATACAGTTATTCAGCCAACCGTATATGACAAACAGCACAAACAAGGGTCATATTCAC
TGGGGAGGGGAAGGGAAGAGGAAGGCAGGTCTGGAGCATGATTTGAGGGGCAGAGGGCTTTGCTTGGTCCCTGTTTCCTG
GACCTCTCAAGAATACTGTGATAGCATCCTGCCGGAGTGCTGGGCTCCGGCGTACAGGAACTACTTTTACCGATGAGCCC
CATACACATTAGACAGCTCACAGCCTTGTCTCACTTACTGCCCGTGCAACGGCTACGTTGGGAAGATTTACTGTTTACTT
ACTCTATGTTTTTCAGTCCCCATGTTATATGTATTGCTGAGTNTGTAGCCTAGAACGAATAAAAAGAGTGAAGTGTATAG
GCGGTCTCTAAACTTATNAGAGTGTCATATCTAGGTCCCTGAACTCTTAANATGTATTTTAGGTTTTTGAACTTGTACTG
CGTGTCATATATGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis