Browse Element(s) Details


OsAffx.14319.1.S1_at

Description tigr:9632.m04623
TID=OsAffx.14319.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SNF2RAD54 family (ETL1 subfamily) protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4783011/11SNF2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14319.1.S1_at--370--9671Chr04:28164692..28164716 (25 bp)
TACCCTAAAGGTGCATTCGGTTTTG
LOC_Os04g47830
OsAffx.14319.1.S1_at--144--6551Chr04:28164761..28165058 (25 bp)
GATTTTGCTATCCACCAACTATTAG
LOC_Os04g47830
OsAffx.14319.1.S1_at--157--1211Chr04:28165057..28165081 (25 bp)
AGTTTCCTATGGTGATTCTGGTACA
LOC_Os04g47830
OsAffx.14319.1.S1_at--782--6551Chr04:28165070..28165094 (25 bp)
GATTCTGGTACAAAGGGTGCCCTTA
LOC_Os04g47830
OsAffx.14319.1.S1_at--427--7711Chr04:28165084..28165108 (25 bp)
GGGTGCCCTTACAGATGAGCATGTT
LOC_Os04g47830
OsAffx.14319.1.S1_at--237--5931Chr04:28165100..28165124 (25 bp)
GAGCATGTTCTTGGATCAGCAAAGT
LOC_Os04g47830
OsAffx.14319.1.S1_at--504--7451Chr04:28165236..28165257 (22 bp)
GTGTCAGGCCTTAGCTGAGCTTTTA
LOC_Os04g47830
OsAffx.14319.1.S1_at--885--8891Chr04:28165248..28165272 (25 bp)
TGAGCTTTTACCTTCCTTAGCAAAT
LOC_Os04g47830
OsAffx.14319.1.S1_at--194--3311Chr04:28165279..28165303 (25 bp)
CACAGAGTTCTCATATTCAGCCAAT
LOC_Os04g47830
OsAffx.14319.1.S1_at--653--8111Chr04:28165304..28165328 (25 bp)
GGACGACAATGCTTGATATCCTTGA
LOC_Os04g47830
OsAffx.14319.1.S1_at--35--131Chr04:28165762..28165853 (25 bp)
ATTCATATCGACGTGGCTAGTGACA
LOC_Os04g47830
Target Sequence 
TACCCTAAAGGTGCATTCGGTTTTGAATGTTCATTGGAAAGAGCAACCCAAGAACTTAGGAAGTACAATGATTTTGCTAT
CCACCAACTATTAGTTTCCTATGGTGATTCTGGTACAAAGGGTGCCCTTACAGATGAGCATGTTCTTGGATCAGCAAAGT
GTCAGGCCTTAGCTGAGCTTTTACCTTCCTTAGCAAATGATGGCCACAGAGTTCTCATATTCAGCCAATGGACGACAATG
CTTGATATCCTTGAATGGACACTGGAAGTAATAGGAGTTACTTATAGACGTCTTGATGGGGGATGGATCGGCAAGCTGAA
GATCGCTGCCATCGCATTGGACAACAGAAACCTGTCACTATCTATAGATTGTGAGCATATCACCATATTCATATCGACGT
GGCTAGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14319.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis