Browse Element(s) Details


Os.51260.1.S1_at

Description gb:AK062357.1
DB_XREF= gi:32972375
TID=Os.51260.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H01, full insert sequence.
FL= gb:AK062357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4784011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51260.1.S1_at--139--7471Chr04:28174690..28174714 (25 bp)
GTGTCCACGGAAAGAAGCTAGTAGT
LOC_Os04g47840
Os.51260.1.S1_at--910--8911Chr04:28174728..28174752 (25 bp)
TGAGCTGAGCTGCTTCATCTGCATC
LOC_Os04g47840
Os.51260.1.S1_at--367--4571Chr04:28174759..28174783 (25 bp)
GCGCGGCCTTTGGATGTCTGTCGTC
LOC_Os04g47840
Os.51260.1.S1_at--1037--7271Chr04:28174819..28174843 (25 bp)
GTGCCTTCCACATGACACAAGCCAT
LOC_Os04g47840
Os.51260.1.S1_at--702--2211Chr04:28174835..28174859 (25 bp)
ACAAGCCATGGCTTTTGCAGCGCGG
LOC_Os04g47840
Os.51260.1.S1_at--74--10132Chr04:28174899..28174923 (25 bp)
TATGCTCGCCGTGCATGCATGGGCA
LOC_Os04g47840
Os.51260.1.S1_at--1111--651Chr04:28175002..28175026 (25 bp)
ATGCAAGGACCACTCAGTCACGGGA
LOC_Os04g47840
Os.51260.1.S1_at--173--1611Chr04:28175030..28175054 (25 bp)
AGCGTATACGGTGATGCTAGCTTCT
LOC_Os04g47840
Os.51260.1.S1_at--313--5511Chr04:28175107..28175131 (25 bp)
GAACACACACGATTGCTTTTGTTTT
LOC_Os04g47840
Os.51260.1.S1_at--1043--791Chr04:28175132..28175156 (25 bp)
ATGGTCGTTTCTTTACATTCCAGCG
LOC_Os04g47840
Os.51260.1.S1_at--115--10491Chr04:28175144..28175168 (25 bp)
TTACATTCCAGCGACTTCGCAAACT
LOC_Os04g47840
Target Sequence 
GTGTCCACGGAAAGAAGCTAGTAGTAGTATGGTGTAGCTGAGCTGAGCTGCTTCATCTGCATCCTGCGCGCGCGGCCTTT
GGATGTCTGTCGTCTCCTCTTCCTGCTGCCTTCTTTCCTTTCCCCTTTTGTGCCTTCCACATGACACAAGCCATGGCTTT
TGCAGCGCGGCGCAGCGCAGCCCTGCCCCTTGTTTCTCCCCTCTCTCGGTATGCTCGCCGTGCATGCATGGGCACTGGAA
AGAGAATAGCCCATGCATAGTGGGGAGGGAGGAAAGAGAAATGGATTCGGAGAGAGATCATCAACTGATGCAATGCAAGG
ACCACTCAGTCACGGGAGGGAGCGTATACGGTGATGCTAGCTTCTCTCCCTCTCACACTCATCTTTTACCCTCAATCTCT
CTCACTCGCACACACAAGAACACACACGATTGCTTTTGTTTTATGGTCGTTTCTTTACATTCCAGCGACTTCGCAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis