Browse Element(s) Details


Os.52565.1.S1_at

Description gb:AK068023.1
DB_XREF= gi:32978041
TID=Os.52565.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132I07, full insert sequence.
FL= gb:AK068023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4786011/11INDETERMINATE-related protein 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47870Os.10753.1.S2_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.10753.1.S1_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.23140.1.S1_at1/114+28207427..28216883PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52565.1.S1_at--266--10851Chr04:28191205..28191229 (25 bp)
TTGGCTTTCATCAGTTTGCTCCTAG
LOC_Os04g47860
Os.52565.1.S1_at--966--2351Chr04:28191240..28191264 (25 bp)
AAAGCTCTGTACTGTCACCTGAAAG
LOC_Os04g47860
Os.52565.1.S1_at--633--6991Chr04:28191298..28191322 (25 bp)
GTACTCCGTCTTTCATGGTTAAACT
LOC_Os04g47860
Os.52565.1.S1_at--851--8031Chr04:28191345..28191369 (25 bp)
GGAGTATCGATCTCTTGCGTTTTAG
LOC_Os04g47860
Os.52565.1.S1_at--460--3071Chr04:28191377..28191401 (25 bp)
AATCAGTAGTCCCAGAATTCCCAGT
LOC_Os04g47860
Os.52565.1.S1_at--217--5211Chr04:28191391..28191415 (25 bp)
GAATTCCCAGTTCTTCCATGAGAAG
LOC_Os04g47860
Os.52565.1.S1_at--892--7591Chr04:28191428..28191452 (25 bp)
GGGCATAGTTCCATATATTTCGCAA
LOC_Os04g47860
Os.52565.1.S1_at--500--1611Chr04:28191500..28191524 (25 bp)
AGCTGTTATCCTCTTCAGTAGTATA
LOC_Os04g47860
Os.52565.1.S1_at--230--771Chr04:28191588..28191612 (25 bp)
ATGTCTATTCCCTTGTTCTCTATAT
LOC_Os04g47860
Os.52565.1.S1_at--92--3071Chr04:28191641..28191665 (25 bp)
AATCTCATGCAAATATTCCCTTCTC
LOC_Os04g47860
Os.52565.1.S1_at--609--10591Chr04:28191661..28191685 (25 bp)
TTCTCCATGGTCTAGTTTGTCTCTA
LOC_Os04g47860
Target Sequence 
TTGGCTTTCATCAGTTTGCTCCTAGTNCTTCATTTAAAGCTCTGTACTGTCACCTGAAAGAAAGAGAATTAATTCAGGTG
AAGAATACAGAAAGTACTCCGTCTTTCATGGTTAAACTATTCTTTTTTTTCCCTTGTCAAGGAGTATCGATCTCTTGCGT
TTTAGTTAGATCAATCAGTAGTCCCAGAATTCCCAGTTCTTCCATGAGAAGTTTTAAGAGCATGGGCATAGTTCCATATA
TTTCGCAAGATAAAACAAAATCAGTTCATTTTTCAAGATTCCATGCATGTACATGAGCTGTTATCCTCTTCAGTAGTATA
GATCAATATTCTTTTTTCTTCCCCCAATTATGAGAAGCAAATAGGAGCCATGGCACACAATCCATGTCTATTCCCTTGTT
CTCTATATCTCTTCAAGCAAAGTTCTTTTTTCCNAAAATCTCATGCAAATATTCCCTTCTCCATGGTCTAGTTTGTCTCT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis