Browse Element(s) Details


Os.10753.1.S2_a_at

Description gb:AK111587.1
DB_XREF= gi:37988250
TID=Os.10753.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full insert sequence.
FL= gb:AK102911.1 gb:AK111504.1 gb:AK111587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4787011/11PINHEAD protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47870Os.10753.1.S2_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.10753.1.S1_a_at11/114+28207427..28216883PINHEAD protein, putative, expressed
LOC_Os04g47870Os.23140.1.S1_at1/114+28207427..28216883PINHEAD protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009965biological_processleaf morphogenesis
GO:0016441biological_processposttranscriptional gene silencing
GO:0035195biological_processmiRNA-mediated gene silencing
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
GO:0004521molecular_functionendoribonuclease activity
GO:0035197molecular_functionsiRNA binding
GO:0035198molecular_functionmiRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10753.1.S2_a_at--689--1391Chr04:28208173..28208197 (25 bp)
AGACGAGTTGCAAACCCTCACGAAC
LOC_Os04g47870
Os.10753.1.S2_a_at--843--10171Chr04:28207925..28208058 (25 bp)
TATCAATTGTGCCTCCTGCGTACTA
LOC_Os04g47870
Os.10753.1.S2_a_at--21--8551Chr04:28207828..28207852 (25 bp)
TGGAGCTGCAACGAGCCGTGGCCTT
LOC_Os04g47870
Os.10753.1.S2_a_at--436--8151Chr04:28207773..28207797 (25 bp)
GGAAATGTAGCCGTCAGGCCTCTAC
LOC_Os04g47870
Os.10753.1.S2_a_at--420--5411Chr04:28207729..28207753 (25 bp)
GAAGCGTGTCATGTTTTACTGCTAA
LOC_Os04g47870
Os.10753.1.S2_a_at--199--1971Chr04:28207712..28207736 (25 bp)
ACTGCTAAGAGCTTGGGCTGTACCC
LOC_Os04g47870
Os.10753.1.S2_a_at--354--8751Chr04:28207694..28207718 (25 bp)
TGTACCCCGTATGCGCCAAGGAATG
LOC_Os04g47870
Os.10753.1.S2_a_at--287--10211Chr04:28207653..28207677 (25 bp)
TATTTTAGCACTTGCACTCTGTCGT
LOC_Os04g47870
Os.10753.1.S2_a_at--1048--3311Chr04:28207639..28207663 (25 bp)
CACTCTGTCGTTGATCCCGTTAAAA
LOC_Os04g47870
Os.10753.1.S2_a_at--551--2691Chr04:28207599..28207623 (25 bp)
AAGCTGTTGGACTATTCTGGGTATT
LOC_Os04g47870
Os.10753.1.S2_a_at--24--3631Chr04:28207478..28207502 (25 bp)
CTTGTTGGACCTTTGTTGTGCTTGA
LOC_Os04g47870
Target Sequence 
AGACGAGTTGCAAACCCTCACGAACAACTTGTGCTACACGTATGCAAGGTGCACTCGCTCTGTATCAATTGTGCCTCCTG
CGTACTATGCTCATCTGGCAGCCTTCCGAGCTCGCTTTTACATGGAGCCAGAGACATCTGACAGTGGATCAATGGCGAGT
GGAGCTGCAACGAGCCGTGGCCTTCCACCAGGTGTGCGCAGCGCCAGGGTTGCTGGAAATGTAGCCGTCAGGCCTCTACC
TGCTCTCAAGGAAAACGTGAAGCGTGTCATGTTTTACTGCTAAGAGCTTGGGCTGTACCCCGTATGCGCCAAGGAATGTA
GTACTATGTTATGTTATTTTAGCACTTGCACTCTGTCGTTGATCCCGTTAAAACGGGTATGCTANCATAAGCTGTTGGAC
TATTCTGGGTATTGTAGTACTACTTGTTTTGTATTTGTGTTTGTGACGCTGCAGAGCGTGAACAACGCAAGTCTGGTACT
TGTATCGTTGTGTTTGTGGGAACCTAAATCTTGTTGGACCTTTGTTGTGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10753.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis