Browse Element(s) Details


Os.24587.1.A1_at

Description gb:CA767251
DB_XREF= gi:27546574
DB_XREF=AF53-Rpf_04_N15_T7_056.ab1
CLONE=C0001479
TID=Os.24587.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24587 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_178318.1 (A.thaliana) putative helicase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g478302/11SNF2 domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein
LOC_Os04g47860Os.16014.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed
LOC_Os04g47860Os.52565.1.S1_at11/114+28189632..28196914INDETERMINATE-related protein 9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048441biological_processpetal development
GO:0048451biological_processpetal formation
GO:0016514cellular_componentSWI/SNF complex
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24587.1.A1_at--30--9511Chr04:28165994..28166018 (25 bp)
TCTCCTGGTGTGAGGTTCTTGTCAT
LOC_Os04g47830
Os.24587.1.A1_at--571--5351Chr04:28167691..28167715 (25 bp)
GAAGATTTCGCACATGATCAGCAAA
LOC_Os04g47830
Os.24587.1.A1_at--391--5651Chr04:28167736..28167760 (25 bp)
GACAGATTCGTGTGAGTGCTCTTAA
NONE
Os.24587.1.A1_at--378--3171Chr04:28167781..28167805 (25 bp)
CAATTTTGTTCGTTAGAGCCCTAGG
NONE
Os.24587.1.A1_at--932--1371Chr04:28167795..28167819 (25 bp)
AGAGCCCTAGGCCTTGTTAACACTG
NONE
Os.24587.1.A1_at--421--6771Chr04:28167810..28167834 (25 bp)
GTTAACACTGTTATGTCTGGTCAAT
NONE
Os.24587.1.A1_at--1079--7171Chr04:28167824..28167848 (25 bp)
GTCTGGTCAATCTTTCAAGTCTTGG
NONE
Os.24587.1.A1_at--251--10371Chr04:28167904..28167928 (25 bp)
TTTTATAGTCGTGCAGCATTTGTTC
NONE
Os.24587.1.A1_at--867--211Chr04:28167921..28167945 (25 bp)
ATTTGTTCATGCTGTGGCCCTCTGT
NONE
Os.24587.1.A1_at--1141--771Chr04:28167968..28167992 (25 bp)
ATGGGAACTGAATAGCCCTACCCCT
NONE
Os.24587.1.A1_at--983--9951Chr04:28167986..28168010 (25 bp)
TACCCCTTGGAAATATGCTCGTCTG
NONE
Target Sequence 
TCTCCTGGTGTGAGGTTCTTGTCATAGAATGCTTGAAGGAACATTCCAATTGTAATGCTTGAAGATTTCGCACATGATCA
GCAAAATTTAATAGCTTGCTTGGAAGACAGATTCGTGTGAGTGCTCTTAACCTTNTCCTGGCCGCTNTTNCAATTTTGTT
CGTTAGAGCCCTAGGCCTTGTTAACACTGTTATGTCTGGTCAATCTTTCAAGTCTTGGGGGTAATATANGAAAAAAGAAA
GGTGAATGGAAATGTTGTATAACAAGAGATCCNTTTTATAGTCGTGCAGCATTTGTTCATGCTGTGGCCCTCTGTTTTCC
NTAAGATGGATGAATGATGGGAACTGAATAGCCCTACCCCTTGGAAATATGCTCGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24587.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis