Browse Element(s) Details


Os.6285.1.S1_at

Description gb:AK107723.1
DB_XREF= gi:32992932
TID=Os.6285.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6285 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E11, full insert sequence.
FL= gb:AK107723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g478201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g47790OsAffx.14318.1.S1_at11/114+28136412..28136669hypothetical protein
LOC_Os04g47800Os.35344.3.S1_x_at11/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800Os.35344.18.S1_x_at10/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47800OsAffx.22940.5.S1_x_at3/114+28139907..28145803transposon protein, putative, Mutator sub-class
LOC_Os04g47810Os.55989.1.S1_at10/114+28150272..28152749expressed protein
LOC_Os04g47820Os.6285.1.S1_at1/114+28157290..28157655expressed protein
LOC_Os04g47830OsAffx.14319.1.S1_at11/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47830Os.24587.1.A1_at2/114+28160569..28167750SNF2 domain-containing protein, putative
LOC_Os04g47840Os.51260.1.S1_at11/114+28174658..28175198expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6285.1.S1_at--44--2851Chr04:28157406..28157430 (25 bp)
AAGTACGAGGATCTATTCCCCGTGG
LOC_Os04g47820
Os.6285.1.S1_at--386--2951Chr04:28157289..28157313 (25 bp)
AAGGCCGACCGATACTGCAAGTGAG
NONE
Os.6285.1.S1_at--946--4031Chr04:28157215..28157239 (25 bp)
CGATGCTTTGCTCTAGTCGGATCTA
NONE
Os.6285.1.S1_at--580--7191Chr04:28157200..28157224 (25 bp)
GTCGGATCTAGCTCCGGATTCAATT
NONE
Os.6285.1.S1_at--856--131Chr04:28157183..28157207 (25 bp)
ATTCAATTCCAATCGAGTTCTCTCG
NONE
Os.6285.1.S1_at--416--4071Chr04:28157170..28157194 (25 bp)
CGAGTTCTCTCGACTTATTGTACTG
NONE
Os.6285.1.S1_at--1098--8731Chr04:28157152..28157176 (25 bp)
TGTACTGCCGCCACACATGAATTTG
NONE
Os.6285.1.S1_at--756--6111Chr04:28157106..28157130 (25 bp)
GAGTGGGTTATGTTTGATCGCCGAA
NONE
Os.6285.1.S1_at--738--6371Chr04:28157091..28157115 (25 bp)
GATCGCCGAATTCTGGTTTATACAC
NONE
Os.6285.1.S1_at--240--2611Chr04:28157015..28157039 (25 bp)
AACGCGGTCTAGTTGCAATGTTCCT
NONE
Os.6285.1.S1_at--91--5191Chr04:28157001..28157025 (25 bp)
GCAATGTTCCTATTAGTCGTAGCAA
NONE
Target Sequence 
AAGTACGAGGATCTATTCCCCGTGGAGTCGAAGAAGTTCGGGTACGACCCCGCCAACGCCGCCAAGGCCTCCCGCAGCCG
CACCGTGGAGGAGGCCCTCGACGACCGCGTGCGCAAGAAGGCCGACCGATACTGCAAGTGAGGTGAGAGCCCTTAGAAGC
TAGGGTTTCCGGCTCCACGGAGCCCGGCGTTCGATGCTTTGCTCTAGTCGGATCTAGCTCCGGATTCAATTCCAATCGAG
TTCTCTCGACTTATTGTACTGCCGCCACACATGAATTTGCTTGAATTAGCTTGAATGGTGGAGTGGGTTATGTTTGATCG
CCGAATTCTGGTTTATACACTGTGGAATATGAAGACGTGCTGTAACTGCAACTAACTGATGATTAATGTGTAACGCGGTC
TAGTTGCAATGTTCCTATTAGTCGTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis