Browse Element(s) Details


Os.50322.1.S2_at

Description gb:AK120727.1
DB_XREF= gi:37990350
TID=Os.50322.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002P17, full insert sequence.
FL= gb:AK108815.1 gb:AK120727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0193011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50322.1.S2_at--894--4871Chr02:500907..500931 (25 bp)
GCTTTCCCGTTTTCAAGCCAGGAAG
LOC_Os02g01930
Os.50322.1.S2_at--345--4191Chr02:500857..500881 (25 bp)
CCCTGTAAATTATCTGTCTCTCTTC
LOC_Os02g01930
Os.50322.1.S2_at--60--5272Chr02:500820..500844 (25 bp)
GAATCCTGCATCTCAACTTGTGCAT
LOC_Os02g01930
Os.50322.1.S2_at--888--10811Chr02:500803..500827 (25 bp)
TTGTGCATGCAGATCTCACTTGTGT
LOC_Os02g01930
Os.50322.1.S2_at--1125--5031Chr02:500795..500819 (25 bp)
GCAGATCTCACTTGTGTATCTCATC
LOC_Os02g01930
Os.50322.1.S2_at--194--8851Chr02:500750..500774 (25 bp)
TGATCTCAACTTGTGCATTCAGATT
LOC_Os02g01930
Os.50322.1.S2_at--438--10531Chr02:500733..500757 (25 bp)
TTCAGATTTCACTTGTGCATCTCAT
LOC_Os02g01930
Os.50322.1.S2_at--506--6651Chr02:500689..500713 (25 bp)
GTTGATCTCAAATTGTGTATGCAGA
LOC_Os02g01930
Os.50322.1.S2_at--792--6911Chr02:500673..500697 (25 bp)
GTATGCAGATTTCACTTGGTAGATG
LOC_Os02g01930
Os.50322.1.S2_at--783--6171Chr02:500505..500529 (25 bp)
GAGGAGGAAGTAACCGAGCCGTCAT
LOC_Os02g01930
Os.50322.1.S2_at--975--7051Chr02:500496..500520 (25 bp)
GTAACCGAGCCGTCATATTATTATT
LOC_Os02g01930
Target Sequence 
GCTTTCCCGTTTTCAAGCCAGGAAGTATGAGGAGAATCAGTCAATCCACCCCCTGTAAATTATCTGTCTCTCTTCAAAAT
CCAATAGGAATCCTGCATCTCAACTTGTGCATGCAGATCTCACTTGTGTATCTCATCTCATCTCATCTTATCGATGTTGA
TCTCAACTTGTGCATTCAGATTTCACTTGTGCATCTCATCTCATCTCATCTTATCGATGTTGATCTCAAATTGTGTATGC
AGATTTCACTTGGTAGATGCTGCAGGAAGGATCAACAGCTTATGAAAAGCCATTCACAGAAGATATGATCATGATAGACG
GGGGTGGCGGCGCGGCGCGNTGGCCGGGGAAGCATGGTCGCCGGCTTGATCGCCGGNNNTCGCTNAGCTTGGACTTGAAC
TTGGAGGAGGAAGTAACCGAGCCGTCATATTATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50322.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis