Browse Element(s) Details


OsAffx.11862.1.S1_at

Description tigr:9630.m00093
TID=OsAffx.11862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ENBP1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0194011/11jmjC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11862.1.S1_at--610--10751Chr02:511129..511153 (25 bp)
TTGAGCCCAAAGATGATCACCCATT
LOC_Os02g01940
OsAffx.11862.1.S1_at--384--9071Chr02:511077..511101 (25 bp)
TGCATTGTGGGATATCTTCCGACGT
LOC_Os02g01940
OsAffx.11862.1.S1_at--606--7871Chr02:510892..510916 (25 bp)
GGTTTCTCATCCTATTCACGATCAA
LOC_Os02g01940
OsAffx.11862.1.S1_at--459--2511Chr02:510718..510742 (25 bp)
AACTTGGTGAGGCTGTGTTTATCCC
LOC_Os02g01940
OsAffx.11862.1.S1_at--689--8671Chr02:510705..510729 (25 bp)
TGTGTTTATCCCAGCAGGATGTCCC
LOC_Os02g01940
OsAffx.11862.1.S1_at--969--991Chr02:510690..510714 (25 bp)
AGGATGTCCCCACCAAGTCAGAAAT
LOC_Os02g01940
OsAffx.11862.1.S1_at--1111--5092Chr11:551536..551661 (25 bp)
GCACTTGACTTTGTTTCTCCGGAAA
NONE
OsAffx.11862.1.S1_at--840--9011Chr02:510472..510496 (25 bp)
TGCAAGAGTGCATCAGGCTGACAGA
LOC_Os02g01940
OsAffx.11862.1.S1_at--730--1451Chr02:510447..510471 (25 bp)
AGAATTTCGCTTGCTTCCGAAGGGT
LOC_Os02g01940
OsAffx.11862.1.S1_at--854--291Chr02:510237..510261 (25 bp)
ATAGCTCTATATGCACTTGATCAAG
LOC_Os02g01940
OsAffx.11862.1.S1_at--1016--2651Chr02:510215..510239 (25 bp)
AAGCCATTGACGATATCACAGGCAA
LOC_Os02g01940
Target Sequence 
TTGAGCCCAAAGATGATCACCCATTTGTTGAGGGAAATCAGACAGAGGGTGGTGCATTGTGGGATATCTTCCGACGTGAA
GATGTCAGCAAATTGCATGATTATCTGATGAAGCATGCAGAAGAGTTTAGACATTATAATTATGAAACAGTCAAACAGGT
TTCTCATCCTATTCACGATCAATGCTTTTATCTAACAAATGAGCACAAGAGAAAGCTCAAGGAAGAACATGGAATTGAGC
CTTGGACATTTGAACAGAAACTTGGTGAGGCTGTGTTTATCCCAGCAGGATGTCCCCACCAAGTCAGAAATTTGAAGTCA
TGTATAAAGGTTGCACTTGACTTTGTTTCTCCGGAAAATGTGCAAGAGTGCATCAGGCTGACAGAAGAATTTCGCTTGCT
TCCGAAGGGTCATAGGGTGAATGAAGATAAACTAGAGGTTAAGAAGATAGCTCTATATGCACTTGATCAAGCCATTGACG
ATATCACAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis