Browse Element(s) Details


OsAffx.24057.1.S1_at

Description tigr:9630.m00096
TID=OsAffx.24057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F1K23.23, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0197010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g01990OsAffx.24058.1.S1_at11/112+549625..551182CCT motif family protein
LOC_Os02g02000Os.53784.1.S1_at11/112+554579..556320Cytochrome P450 74A3, putative, expressed
LOC_Os02g02010OsAffx.2483.1.S1_at10/112+558915..559965hypothetical protein
LOC_Os02g02020Os.7241.1.S1_at11/112+561897..564369pentatricopeptide, putative, expressed
LOC_Os02g02030Os.51555.1.S1_at11/112+564717..565953expressed protein
LOC_Os02g02040Os.6801.2.S1_x_at11/112+566048..572465Protein kinase domain containing protein, expressed
LOC_Os02g02040Os.37215.1.S1_at1/112+566048..572465Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24057.1.S1_at--412--8451Chr02:542416..542440 (25 bp)
GGCCACTGTTAGTTCATGTGTCTCA
LOC_Os02g01970
OsAffx.24057.1.S1_at--687--10231Chr02:542453..542477 (25 bp)
TATTGTTCTGATATCCACTCTCTAG
LOC_Os02g01970
OsAffx.24057.1.S1_at--304--6671Chr02:543082..543106 (25 bp)
GTTGCAGGCTTACTGTGTATCTGTT
LOC_Os02g01970
OsAffx.24057.1.S1_at--873--8051Chr02:543266..543290 (25 bp)
GGAGAGCAACCCTCATTGGTGTCAA
LOC_Os02g01970
OsAffx.24057.1.S1_at--514--4851NONE
GCTAGTTTTCAGGTGGTCATGTCAG
NONE
OsAffx.24057.1.S1_at--472--8571Chr02:544610..544634 (25 bp)
TGGATTTCAGCCAACAAACCGCCTA
LOC_Os02g01970
OsAffx.24057.1.S1_at--848--2351Chr02:544625..544649 (25 bp)
AAACCGCCTAGCTGTGAATCATTGG
LOC_Os02g01970
OsAffx.24057.1.S1_at--158--3031Chr02:544656..544680 (25 bp)
AATCCATTAACGAAGCTCCTGTACG
LOC_Os02g01970
OsAffx.24057.1.S1_at--107--5211Chr02:544823..544847 (25 bp)
GAATTTCTCGCCCAGCTAAGGTTGT
LOC_Os02g01970
OsAffx.24057.1.S1_at--538--1011Chr02:544841..544865 (25 bp)
AGGTTGTCCCAGTTGAGTTGCTGAT
LOC_Os02g01970
OsAffx.24057.1.S1_at--377--751Chr02:544864..544888 (25 bp)
ATGTCGGTGAATCCAGAATCCTTTT
LOC_Os02g01970
Target Sequence 
GGCCACTGTTAGTTCATGTGTCTCATCATCACAGAGCTATTGTTCTGATATCCACTCTCTAGATAGTAGTGAGTTGCAGG
CTTACTGTGTATCTGTTGTTGAGAAAATTAAAGACTCATTTGGTTGTACTGGTGATCTAATGGTTGATGCAAATATTGGT
GCTTGGGTTGGAGAACTGCCTGAATTCTTCAAGGGCATCAACTGTGACAGTCATGATGATTATGTCGATATTCAGAGTAC
TGGTGCTATTAGCCAAGGAGAGCAACCCTCATTGGTGTCAAGTCCTATTAAGATGTCTTCTCATCTGGAACAAAATGATG
ACACTCAAGAAACTCTGCAGAATATTGCTAGTTTTCAGGTGGTCATGTCAGAAAGAGGTAAAGTAGTTGGATTTCAGCCA
ACAAACCGCCTAGCTGTGAATCATTGGGCAACAAATCCATTAACGAAGCTCCTGTACGAGGGGCGAAAGATCTCTCCAGC
CTTTCTGGAGCCTAGGCTTAGAATTTCTCGCCCAGCTAAGGTTGTCCCAGTTGAGTTGCTGATGTCGGTGAATCCAGAAT
CCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis