Browse Element(s) Details


Os.37215.1.S1_at

Description gb:AK060061.1
DB_XREF= gi:32970079
TID=Os.37215.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g13720 (P0047B07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full insert sequence.
FL= gb:AK060061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4632011/11integral membrane protein, putative, expressed
LOC_Os02g020401/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46260OsAffx.9045.1.S1_x_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46260OsAffx.9045.1.S1_at1/117+27599976..27607303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37215.1.S1_at--379--8312Chr07:27627338..27627544 (25 bp)
GGCTATCGATGTGTATCTTGCTGGA
LOC_Os07g46320
Os.37215.1.S1_at--427--811Chr07:27627566..27627590 (25 bp)
ATGGGTCTGTATGGGCTGTTCATCA
LOC_Os07g46320
Os.37215.1.S1_at--376--2591Chr07:27627593..27627617 (25 bp)
AACGATTTTCCTGATGTACCTGCAT
LOC_Os07g46320
Os.37215.1.S1_at--968--9052Chr10:16321545..16321569 (25 bp)
TGCATCTGATCGTGCTCTCAAGGGA
NONE
Os.37215.1.S1_at--383--2891Chr07:27627632..27627656 (25 bp)
AAGGGATCATCCTTGTTTGGCATGT
LOC_Os07g46320
Os.37215.1.S1_at--396--5291Chr07:27627957..27627981 (25 bp)
GAATGGACCTGCTCAGCTACGCGGT
LOC_Os07g46320
Os.37215.1.S1_at--121--1171Chr07:27628047..27628071 (25 bp)
AGTACATGATTGCAGCGCCGGACAT
LOC_Os07g46320
Os.37215.1.S1_at--251--5671Chr07:27628067..27628091 (25 bp)
GACATGTTGCCTTCTACTCAGTAGT
LOC_Os07g46320
Os.37215.1.S1_at--532--1431Chr07:27628119..27628143 (25 bp)
AGAACTCATTGCCTCAGTGCTTGTA
LOC_Os07g46320
Os.37215.1.S1_at--949--5451Chr07:27628157..27628181 (25 bp)
GAACTGTTGCTAGGCAAGCCCTGAT
LOC_Os07g46320
Os.37215.1.S1_at--913--2472Chr07:27628230..27628254 (25 bp)
AACAGCCTTATCTTTTCGTTTATGC
LOC_Os07g46320
Target Sequence 
GGCTATCGATGTGTATCTTGCTGGAACAGTCATGCTGATTTTTGGGATGGGTCTGTATGGGCTGTTCATCAGCAACGATT
TTCCTGATGTACCTGCATCTGATCGTGCTCTCAAGGGATCATCCTTGTTTGGCATGTTNGCTTTGAAGGAGAGACCGAGG
TGGATGAGAATCAGCTCTCTCGNTGAGCTCAAAACNAAGCTGGGCCACATCATCGTGATGATTCTCCTGGTGAAGATGTT
CGAGAGGAGCAAGATGGTGCACATCACCACGGGAATGGACCTGCTCAGCTACGCGGTCTGCATCTTCTTGTCGTCGGCTT
CCCTGTACATCCTGCACAACCTTCATCGCCCAGAACACGAGTAGTACATGATTGCAGCGCCGGACATGTTGCCTTCTACT
CAGTAGTATTTTTTATAGCACATGCCATATAGGAAGAACTCATTGCCTCAGTGCTTGTATTTTGTAGCACTAGAACTGTT
GCTAGGCAAGCCCTGATGCTGGGCTNAAACGGATTGCAAGGACAAATCAGTGTAAAGAACTCCTAAACAGCCTTATCTTT
TCGTTTATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis