Browse Element(s) Details


Os.30832.1.S1_at

Description gb:AK108253.1
DB_XREF= gi:32993462
TID=Os.30832.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2,At2g28420 (P0047B07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A02, full insert sequence.
FL= gb:AK108253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4636011/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30832.1.S1_at--560--7371Chr07:27651469..27651493 (25 bp)
GTGAGAAAAACGTACATCCAAGTGT
LOC_Os07g46360
Os.30832.1.S1_at--245--2011Chr07:27651456..27651480 (25 bp)
ACATCCAAGTGTACGTAGTTAGTAA
LOC_Os07g46360
Os.30832.1.S1_at--477--7051Chr07:27651435..27651459 (25 bp)
GTAAAATTAAGTAGCTGTCAGGTCT
LOC_Os07g46360
Os.30832.1.S1_at--441--3811Chr07:27651421..27651445 (25 bp)
CTGTCAGGTCTGAGTACGCGAGGTT
LOC_Os07g46360
Os.30832.1.S1_at--711--51Chr07:27651406..27651430 (25 bp)
ACGCGAGGTTGGCTGGTTGACCGGC
LOC_Os07g46360
Os.30832.1.S1_at--556--4511Chr07:27651379..27651403 (25 bp)
GCCCGGCGAAATTTCGGTTAGCTGG
LOC_Os07g46360
Os.30832.1.S1_at--268--3111Chr07:27651370..27651394 (25 bp)
AATTTCGGTTAGCTGGTTGCGTCGT
LOC_Os07g46360
Os.30832.1.S1_at--751--10451Chr07:27651362..27651386 (25 bp)
TTAGCTGGTTGCGTCGTTGCAAGCT
LOC_Os07g46360
Os.30832.1.S1_at--775--6671Chr07:27651355..27651379 (25 bp)
GTTGCGTCGTTGCAAGCTTGAGTTT
LOC_Os07g46360
Os.30832.1.S1_at--37--3251Chr07:27651343..27651367 (25 bp)
CAAGCTTGAGTTTGCGTATGCTATT
LOC_Os07g46360
Os.30832.1.S1_at--30--4651Chr07:27651330..27651354 (25 bp)
GCGTATGCTATTACTTTCGTTCGTT
LOC_Os07g46360
Target Sequence 
GTGAGAAAAACGTACATCCAAGTGTACGTAGTTAGTAAAATTAAGTAGCTGTCAGGTCTGAGTACGCGAGGTTGGCTGGT
TGACCGGCCGGCCCGGCGAAATTTCGGTTAGCTGGTTGCGTCGTTGCAAGCTTGAGTTTGCGTATGCTATTACTTTCGTT
CGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis