Browse Element(s) Details


Os.6412.1.S1_at

Description gb:AK072927.1
DB_XREF= gi:32982950
TID=Os.6412.1
CNT=40
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.6412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Sec31p (P0047B07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143H22, full insert sequence.
FL= gb:AK072927.1 gb:AK104043.1 gb:AK100264.1 gb:AK100911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4637011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0009845biological_processseed germination
GO:0000166molecular_functionnucleotide binding
GO:0005199molecular_functionstructural constituent of cell wall
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6412.1.S1_at--636--2531Chr07:27663129..27663153 (25 bp)
AACTCATTCAGCTTTGCAGTGCACT
LOC_Os07g46370
Os.6412.1.S1_at--51--311Chr07:27663156..27663180 (25 bp)
ATAGCGGTGATTTTGCCACTGCGAT
LOC_Os07g46370
Os.6412.1.S1_at--837--7831Chr07:27663669..27663693 (25 bp)
GGTACTTCTGACAACGAGCGACTGG
LOC_Os07g46370
Os.6412.1.S1_at--952--1951Chr07:27663689..27663713 (25 bp)
ACTGGGACGAGTGCAACTTCTGGCT
LOC_Os07g46370
Os.6412.1.S1_at--1123--9451Chr07:27663707..27663731 (25 bp)
TCTGGCTTGCCGCATTGAAGCGTAT
LOC_Os07g46370
Os.6412.1.S1_at--467--6111Chr07:27663765..27663789 (25 bp)
GAGTGCCGCGTTTTGCAGCTAGTTC
LOC_Os07g46370
Os.6412.1.S1_at--191--4871Chr07:27663782..27663806 (25 bp)
GCTAGTTCTGTATACACACACCTTT
LOC_Os07g46370
Os.6412.1.S1_at--596--3311Chr07:27663858..27663882 (25 bp)
CACAGTAGTGCTATCTTGCTTCTTG
LOC_Os07g46370
Os.6412.1.S1_at--891--2431Chr07:27663920..27663944 (25 bp)
AAAAGTGGTCTGTTGTCTGGGCGAT
LOC_Os07g46370
Os.6412.1.S1_at--388--4971Chr07:27664033..27664057 (25 bp)
GCATCTAGTTGTTATAGCTGGCCCA
LOC_Os07g46370
Os.6412.1.S1_at--20--4711Chr07:27664049..27664073 (25 bp)
GCTGGCCCATTTTGTTTTACCTTAT
LOC_Os07g46370
Target Sequence 
AACTCATTCAGCTTTGCAGTGCACTTGATAGCGGTGATTTTGCCACTGCGATGCACCTTCAGGTACTTCTGACAACGAGC
GACTGGGACGAGTGCAACTTCTGGCTTGCCGCATTGAAGCGTATGATCAAGACGAGGCAGAATTTCAGAATGTAAACGAG
TGCCGCGTTTTGCAGCTAGTTCTGTATACACACACCTTTTCGACTTCTTACAAAAGTTGTTAGTGTTAGCAACTTATGAG
GGTTTGTCTGCACAGTAGTGCTATCTTGCTTCTTGTGTTCCCTCCTGCCAATTATACTGAAGCTTGTCGCTTAAAAGTGG
TCTGTTGTCTGGGCGATTACTTTTTGATAGTTCTTCGACATTCCTTTGTGAGGATCAGTTCTTGGGTGATGGTGGTTGGA
TTTCACGAGGATTACTTGTAAGTGGGCATCTAGTTGTTATAGCTGGCCCATTTTGTTTTACCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis