Browse Element(s) Details


Os.26780.1.S1_at

Description gb:CA766309
DB_XREF= gi:27548207
DB_XREF=AF53-Rpf_10_P13_T7_063.ab1
CLONE=C0003829
TID=Os.26780.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0047B07.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26780.1.S1_at--446--671Chr07:27685580..27685604 (25 bp)
ATGAAGAGTTATCCACAATATCCGG
LOC_Os07g46400
Os.26780.1.S1_at--378--3111Chr07:27685564..27685588 (25 bp)
AATATCCGGATTTGGCCCTTTCACT
LOC_Os07g46400
Os.26780.1.S1_at--838--6531Chr07:27685514..27685538 (25 bp)
GATTTTTCCACATGATCCCAGCTGA
LOC_Os07g46400
Os.26780.1.S1_at--951--6371Chr07:27685501..27685525 (25 bp)
GATCCCAGCTGACACTGAGACAATT
LOC_Os07g46400
Os.26780.1.S1_at--657--5951Chr07:27685360..27685384 (25 bp)
GAGCAAGCACCATCAGTTCTGTTCA
LOC_Os07g46400
Os.26780.1.S1_at--635--231Chr07:27685321..27685345 (25 bp)
ATATCTACGGCAAGTATGCCCCGTT
LOC_Os07g46400
Os.26780.1.S1_at--161--2831Chr07:27685310..27685334 (25 bp)
AAGTATGCCCCGTTTCAGTTCTTGG
LOC_Os07g46400
Os.26780.1.S1_at--174--7571Chr07:27685189..27685213 (25 bp)
GGGCTTCTACAACAAGCAGTTCGGT
LOC_Os07g46400
Os.26780.1.S1_at--944--1591Chr07:27685024..27685048 (25 bp)
AGCTGCCACTTGTCTCTACTATATT
LOC_Os07g46400
Os.26780.1.S1_at--1080--9791Chr07:27684984..27685008 (25 bp)
TAACGTTAACTGCTAGATACATCCA
LOC_Os07g46400
Os.26780.1.S1_at--970--6891Chr07:27684946..27684970 (25 bp)
GTATCTCCCCTAAATTAGCTCTGTT
LOC_Os07g46400
Target Sequence 
ATGAAGAGTTATCCACAATATCCGGATTTGGCCCTTTCACTCGTGCCAATGTGCTCATGTGTATGGGATTTTTCCACATG
ATCCCAGCTGACACTGAGACAATTAGGCATTTAAAGCAGTTTCACAAGAGAGCAAGCACCATCAGTTCTGTTCAGAAGGA
ATTGGATAATATCTACGGCAAGTATGCCCCGTTTCAGTTCTTGGCNTACTGGTGCGAGCTATGGGGCTTCTACAACAAGC
AGTTCGGTANAATCAGTGATATGGAACCNATCAACTACAGACTATTNACCGCAAGNAAATTGAAGAAANGCAACNGTCAA
TAGCTGAAAATNCAGGCNAACATGTTNCATTCCAACAAGNANGATNAATATNTATTGTGGTTNTTTANAGCTGCCACTTG
TCTCTACTATATTNGGATTGACATTATTTAACGTTAACTGCTAGATACATCCAGAAAACTTGGNTTGTATCTCCCCTAAA
TTAGCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis