Browse Element(s) Details


Os.18009.1.S1_a_at

Description gb:AK100166.1
DB_XREF= gi:32985375
TID=Os.18009.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 30S ribosomal protein S9-like protein~contains ESTs C96952(C50186),AU108714(C50186) (P0047B07.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022A05, full insert sequence.
FL= gb:AK100166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4644011/11ribosomal protein S9 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18009.1.S1_a_at--984--9811Chr07:27705232..27705253 (22 bp)
TAACAGGTACCTGCTCTTGTTTTTT
LOC_Os07g46440
Os.18009.1.S1_a_at--642--8591Chr07:27705204..27705228 (25 bp)
TGGTCATGGCGTTCTGTATTTGCAG
LOC_Os07g46440
Os.18009.1.S1_a_at--495--311Chr07:27705143..27705167 (25 bp)
ATACTCATATATTCCAGCCTTTACC
LOC_Os07g46440
Os.18009.1.S1_a_at--106--5991Chr07:27705103..27705127 (25 bp)
GAGACACAAGCATTCTGGTTTTCTT
LOC_Os07g46440
Os.18009.1.S1_a_at--548--2971Chr07:27704980..27705004 (25 bp)
AATGGGCTGGGCTACCGATGGAATT
LOC_Os07g46440
Os.18009.1.S1_a_at--606--5211Chr07:27704960..27704984 (25 bp)
GAATTCGTTGTCTAGCTCCCAGAAG
LOC_Os07g46440
Os.18009.1.S1_a_at--879--10131Chr07:27704904..27704928 (25 bp)
TATGCCTGTATATCAGCTGCTGCCA
LOC_Os07g46440
Os.18009.1.S1_a_at--664--10391Chr07:27704876..27704900 (25 bp)
TTTTCCTCCATGTATGTCTGTGCAT
LOC_Os07g46440
Os.18009.1.S1_a_at--417--7331Chr07:27704857..27704881 (25 bp)
GTGCATGCTCTCTGACTATGGTAAA
LOC_Os07g46440
Os.18009.1.S1_a_at--62--6791Chr07:27704826..27704850 (25 bp)
GTTATGCGTCCAACTCTGTAAGCAG
LOC_Os07g46440
Os.18009.1.S1_a_at--404--1311Chr07:27704768..27704792 (25 bp)
AGATGTCATTGTGCTTCTCTCTGAG
LOC_Os07g46440
Target Sequence 
TAACAGGTACCTGCTCTTGTTTTTTTTCTGGTCATGGCGTTCTGTATTTGCAGTTGGACTGATATTTTCGGAAGGTCCTT
TTGAGCTCTATACTCATATATTCCAGCCTTTACCGATAATGGGCATAATGAGACACAAGCATTCTGGTTTTCTTTAATGT
TGACAATTGACACAGCAAACTGATCCCAGGGAAAAAAAAATCATTTGACCTAATTAAGANGCAGAAGATACATTGTTATA
AGCTGTCATTAAAATGGGCTGGGCTACCGATGGAATTCGTTGTCTAGCTCCCAGAAGTTATTTCTGTTTTGCTGGGATGG
CATGGCTGTATGCCTGTATATCAGCTGCTGCCACATTTTTCCTCCATGTATGTCTGTGCATGCTCTCTGACTATGGTAAA
TGAGAAGTTATGCGTCCAACTCTGTAAGCAGTAATAAGACCAANTGGAATATTTTCCAAACGTGAGATGTCATTGTGCTT
CTCTCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18009.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis