Browse Element(s) Details


Os.7284.1.S1_a_at

Description gb:AK068311.1
DB_XREF= gi:32978329
TID=Os.7284.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative thioredoxin reductase (P0047B07.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151L11, full insert sequence.
FL= gb:AK068311.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4641011/11thioredoxin-disulfide reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005759cellular_componentmitochondrial matrix
GO:0005829cellular_componentcytosol
GO:0004791molecular_functionthioredoxin-disulfide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7284.1.S1_a_at--235--7631Chr07:27696330..27696350 (21 bp)
GGGACAGTATGCACTCCGCAAAGTA
LOC_Os07g46410
Os.7284.1.S1_a_at--415--9031Chr07:27696335..27696359 (25 bp)
TGCACTCCGCAAAGTATATCATGAA
LOC_Os07g46410
Os.7284.1.S1_a_at--769--5531Chr07:27696357..27696381 (25 bp)
GAAAGTCCAAGGCTTGTCTGTGTTC
LOC_Os07g46410
Os.7284.1.S1_a_at--485--6731Chr07:27696378..27696402 (25 bp)
GTTCTATATACTTCTCCAACATGTG
LOC_Os07g46410
Os.7284.1.S1_a_at--824--9491Chr07:27696390..27696414 (25 bp)
TCTCCAACATGTGGTCCTTGCAGAA
LOC_Os07g46410
Os.7284.1.S1_a_at--444--7791Chr07:27696402..27696426 (25 bp)
GGTCCTTGCAGAACCTTAAAGCCAA
LOC_Os07g46410
Os.7284.1.S1_a_at--86--1851Chr07:27696896..27696920 (25 bp)
ACGAACACGTTCATTTTGTCGAAAT
LOC_Os07g46410
Os.7284.1.S1_a_at--572--5051Chr07:27696946..27696970 (25 bp)
GCAGAAGCTGCAGGCATCATGGGAA
LOC_Os07g46410
Os.7284.1.S1_a_at--126--691Chr07:27697191..27697215 (25 bp)
ATGAGCTGAACCCAACATACGATTC
LOC_Os07g46410
Os.7284.1.S1_a_at--1045--8931Chr07:27697252..27697276 (25 bp)
TGACTATTTCTAGCTGCCACCGTGG
LOC_Os07g46410
Os.7284.1.S1_a_at--269--3351Chr07:27697269..27697293 (25 bp)
CACCGTGGTGGCCAATTTTTGGTCA
LOC_Os07g46410
Target Sequence 
GGGACAGTATGCACTCCGCAAAGTATATCATGAAAGTCCAAGGCTTGTCTGTGTTCTATATACTTCTCCAACATGTGGTC
CTTGCAGAACCTTAAAGCCAATTCTAAGCAAGGTTATANATGAGTACAACGAACACGTTCATTTTGTCGAAATTGACATC
GAGGAGGATCCTGAAATAGCAGAAGCTGCAGGCATCATGGGAACACCATGTGTTCAATTTTTTAAAAATAAAGAAATGCT
CAGGACTGTCTCTGGTGTTAAAATGAAGAAGGAATATAGGGAGTTTATCGAGTCAAACAAATGAGCTGAACCCAACATAC
GATTCAAATTTTAAAGTGTAATAGTCTTCTTTTGCCCATACTGACTATTTCTAGCTGCCACCGTGGTGGCCAATTTTTGG
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7284.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis