Browse Element(s) Details


Os.8756.2.A1_at

Description gb:CB633791
DB_XREF= gi:29628780
DB_XREF=OSIIEb12N21.r
CLONE=OSIIEb12N21
TID=Os.8756.2
CNT=11
FEA=mRNA
TIER=Stack
STK=7
UG=Os.8756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU062472(C11331),AU092186(C11331)~similar to symbiosis-related protein (P0047B07.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4638011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8756.2.A1_at--990--1651Chr07:27677352..27677376 (25 bp)
AGCGCGGCTGGGACGTCACCAAGAA
LOC_Os07g46380
Os.8756.2.A1_at--692--5831Chr07:27677408..27677432 (25 bp)
GACCTGCCACGCTTCAGGGAGGTGC
LOC_Os07g46380
Os.8756.2.A1_at--849--1351Chr07:27677483..27677507 (25 bp)
AGAGAGAGCCAGTGATCGAGCAATC
LOC_Os07g46380
Os.8756.2.A1_at--698--5951Chr07:27677500..27677524 (25 bp)
GAGCAATCAATCGATTGATCGTTTG
LOC_Os07g46380
Os.8756.2.A1_at--32--10711Chr07:27677522..27677546 (25 bp)
TTGCTTGATTTGACCCGGTTTGGTT
LOC_Os07g46380
Os.8756.2.A1_at--299--2251Chr07:27677551..27677575 (25 bp)
AAATTAACTACTCCCATATGCTGCT
LOC_Os07g46380
Os.8756.2.A1_at--601--9911Chr07:27677559..27677583 (25 bp)
TACTCCCATATGCTGCTCTAGCTCT
LOC_Os07g46380
Os.8756.2.A1_at--131--10791Chr07:27677632..27677656 (25 bp)
TTGTTGTTACTCAAACACTGACTTG
LOC_Os07g46380
Os.8756.2.A1_at--1090--4271Chr07:27677658..27677682 (25 bp)
CCTGACAATTCTTTGCATTAGATTG
LOC_Os07g46380
Os.8756.2.A1_at--759--5191Chr07:27677684..27677708 (25 bp)
GAATTGATGTACTTTGTGGTTTTAC
LOC_Os07g46380
Os.8756.2.A1_at--82--7511Chr07:27677699..27677723 (25 bp)
GTGGTTTTACACGTTTCAGTTCTAT
LOC_Os07g46380
Target Sequence 
AGCGCGGCTGGGACGTCACCAAGAAGGTCTACCTCGATCGCCAGAACGTCCGCCTCGACCTGCCACGCTTCAGGGAGGTG
CTCGTCGGAGCTCACCGGCACTTGGTCGCCGGCAAGCGGCGGCGCCGGCAAAGAGAGAGCCAGTGATCGAGCAATCAATC
GATTGATCGTTTGCTTGATTTGACCCGGTTTGGTTAACCAAATTAACTACTCCCATATGCTGCTCTAGCTCTCTCTCTCT
CTCTCTCTACACAATTTTTTTTTGCNTTTTTTTTTCTTTTCTTGTTGTTACTCAAACACTGACTTGNCCTGACAATTCTT
TGCATTAGATTGTGAATTGATGTACTTTGTGGTTTTACACGTTTCAGTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8756.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis