Browse Element(s) Details


OsAffx.10957.1.S1_x_at

Description tigr:9629.m00720
TID=OsAffx.10957.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glyoxalase family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0785010/11lactoylglutathione lyase family protein, putative
LOC_Os10g366001/11hypothetical protein
LOC_Os07g463601/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07850OsAffx.10957.1.S1_x_at10/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.10957.1.S1_at9/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.30690.1.S1_x_at1/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07860NANA1+3780493..3783045retrotransposon protein, putative, unclassified
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10957.1.S1_x_at--106--8992Chr10:19251039..19251059 (21 bp)
TGAACCACGTCTCCCTGGTGTGCCG
LOC_Os10g36600
OsAffx.10957.1.S1_x_at--1024--5731Chr01:3776861..3777251 (25 bp)
GACGGCGCATGGCTGTTCAACTACG
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--998--6752Chr01:3777241..3777265 (25 bp)
GTTCAACTACGGCATCGGCATCCAC
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--468--5931Chr01:3777289..3777313 (25 bp)
GAGCATGCCACCCAATAAGGAGATC
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--979--331Chr01:3777303..3777327 (25 bp)
ATAAGGAGATCAACCCCAAGGATAA
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--290--351Chr01:3777324..3777343 (20 bp)
ATAACCACATCTCATTCACGTGCGA
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--819--3591NONE
CATTCACGTGCGAGAGCATGGAGGC
NONE
OsAffx.10957.1.S1_x_at--1077--7431Chr01:3778409..3778433 (25 bp)
GTGTACGTGGACCAGATCTTCTTCC
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--693--4092Chr01:3778441..3778465 (25 bp)
CGACGGCTTCATGATCGAGATCTGC
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--722--6391Chr01:3778453..3778477 (25 bp)
GATCGAGATCTGCACCTGCGACAAG
LOC_Os01g07850
OsAffx.10957.1.S1_x_at--735--2791Chr01:3778556..3778580 (25 bp)
AAGATCAGGCCCGTCAAGCAGCCGT
LOC_Os01g07850
Target Sequence 
TGAACCACGTCTCCCTGGTGTGCCGGTCGCTGTCCACCTCGCTCACCTTCTACCGCGACTTCCTCGGCTTCGTCTCCGTC
CGCCGCCCGGGCTCCTTCGACTTCGACGGCGCATGGCTGTTCAACTACGGCATCGGCATCCACCTGCTGCAGGCAGAGGA
CCCGGAGAGCATGCCACCCAATAAGGAGATCAACCCCAAGGATAACCACATCTCATTCACGTGCGAGAGCATGGAGGCGG
TGCAGCGGCGGCTGAAGGAGATGGGCGTCCGGTACGTGCAGCGGCGGGTGGAGGAAGGCGGCGTGTACGTGGACCAGATC
TTCTTCCACGACCCCGACGGCTTCATGATCGAGATCTGCACCTGCGACAAGCTCCCCGTCGTCCCCCTCGACGCCGCCGC
CGCCCACTCCATCTTCGCCGGCCGCTCGCCGCCGCCGCCCGTCGCCTGCAAGATCAGGCCCGTCAAGCAGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis